Biology

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  • 2019

    On the accuracy of drug-resistant cell population estimation from total cancer size measurements

    Doosthosseini, M., Hansen, E. & Fathy, H. K., Jun 2019, 2019 18th European Control Conference, ECC 2019. Institute of Electrical and Electronics Engineers Inc., p. 343-350 8 p. 8795814. (2019 18th European Control Conference, ECC 2019).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations
  • 2018

    Effects of phenotypical patterns on epigenetic markers

    Hashemi, R., Bahrami, A., Young, J., Schrey, A., Robbins, T. R., Ragsdale, A. & Langkilde, T., Dec 2018, Proceedings - 2018 International Conference on Computational Science and Computational Intelligence, CSCI 2018. Institute of Electrical and Electronics Engineers Inc., p. 1351-1356 6 p. 8947676. (Proceedings - 2018 International Conference on Computational Science and Computational Intelligence, CSCI 2018).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2017

    Allsome sequence bloom trees

    Sun, C., Harris, R. S., Chikhi, R. & Medvedev, P., 2017, Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Proceedings. Sahinalp, S. C. (ed.). Springer Verlag, p. 272-286 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10229 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    15 Scopus citations
  • 2016

    A pipeline for identifying integration sites of mobile elements in the genome using next-generation sequencing

    Malhotra, R., Elleder, D., Bao, L., Hunter, D. R., Poss, M. & Acharya, R., 2016, Proceedings of the 8th International Conference on Bioinformatics and Computational Biology, BICOB 2016. Haspel, N. & Ioerger, T. (eds.). The International Society for Computers and Their Applications (ISCA), p. 63-68 6 p. (Proceedings of the 8th International Conference on Bioinformatics and Computational Biology, BICOB 2016).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations
  • 2014

    A lin-kernighan heuristic for the DCJ median problem of genomes with unequal contents

    Yin, Z., Tang, J., Schaeffer, S. W. & Bader, D. A., 2014, Computing and Combinatorics - 20th International Conference, COCOON 2014, Proceedings. Springer Verlag, p. 227-238 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8591 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • A preliminary assessment of endocrine disrupting compounds in vernal ponds in central Pennsylvania

    Mina, O., Gall, H. E., Carlson, B. & Langkilde, T. L., 2014, American Society of Agricultural and Biological Engineers Annual International Meeting 2014, ASABE 2014. American Society of Agricultural and Biological Engineers, p. 4046-4053 8 p. (American Society of Agricultural and Biological Engineers Annual International Meeting 2014, ASABE 2014; vol. 6).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations

  • Integrated microdevice for single-neuron in vivo electroporation

    Zhou, M. D., Mao, Y. W. & Zheng, S. Y., 2014, 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014. Chemical and Biological Microsystems Society, p. 345-347 3 p. (18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2013

    Estimating viral haplotypes in a population using k-mer counting

    Malhotra, R., Prabhakara, S., Poss, M. & Acharya, R., 2013, Pattern Recognition in Bioinformatics - 8th IAPR International Conference, PRIB 2013, Proceedings. Springer Verlag, p. 265-276 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7986 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    4 Scopus citations
  • 2012

    Alignment seeding strategies using contiguous pyrimidine purine matches

    Hou, M., Zhang, L. & Harris, R. S., 2012, 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012. p. 384-391 8 p. (2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2011

    Spatial dynamics of invasive Carduus thistles

    Jongejans, E., Allen, M. R., Leib, A. E., Marchetto, K. M., Pedatella, N. M., Peterson-Smith, J., Rauschert, E. S. J., Ruggiero, D. C., Russo, L. A., Ruth, L. E., Sezen, Z., Skarpaas, O., Teller, B. J., Warg, L. A., Yang, S., Zhang, R. & Shea, K., 2011, MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty. p. 2514-2520 7 p. (MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations
  • 2008

    Internal validation of ancestral gene order reconstruction in angiosperm phylogeny

    Sankoff, D., Zheng, C., Wall, P. K., DePamphilis, C., Leebens-Mack, J. & Albert, V. A., 2008, Comparative Genomics, International Workshop, RECOMB-CG 2008, Proceedings. p. 252-264 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5267 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    4 Scopus citations

  • Processes and interactions in macrofaunal assemblages at hydrothermal vents: A modeling perspective

    Shea, K., Metaxas, A., Young, C. R. & Fisher, C. R., 2008, Magma to Microbe: Modeling Hydrothermal Processes at Ocean Spreading Centers, 2008. Lowell, R. P., Perit, M. R., Metaxas, A. & Seewald, J. S. (eds.). Blackwell Publishing Ltd, p. 259-274 16 p. (Geophysical Monograph Series; vol. 178).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    3 Scopus citations
  • 2007

    Boolean algebraic structures of the genetic code: Possibilities of applications

    Grau, R., Del Chavez, M. C., Sanchez, R., Morgado, E., Casas, G. & Bone, I., 2007, Knowledge Discovery and Emergent Complexity in Bioinformatics - First International Workshop, KDECB 2006, Revised Selected Papers. Springer Verlag, p. 10-21 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4366 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations
  • 2006

    Feature extraction using clustering of protein

    Bonet, I., Saeys, Y., Ábalo, R. G., García, M. M., Sanchez, R. & Van De Peer, Y., 2006, Progress in Pattern Recognition, Image Analysis and Applications - 11th Iberoamerican Congress in Pattern Recognition, CIARP 2006, Proceedings. Springer Verlag, p. 614-623 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4225 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    6 Scopus citations

  • Studies of absorption and scattering of light on a model coral

    Méndez, E. R., Terán-Bobadilla, E., Enriquez, S. & Iglesias-Prieto, R., 2006, Frontiers in Optics, FiO 2006. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • 2005

    Prediction of human immunodeficiency virus drug resistance using contact energies

    Cruz, I. B., Lorenzo, M. M. G., Ábalo, R. G. & Rodríguez, R. S., 2005, Proceedings of 2005 International Conference on Neural Networks and Brain Proceedings, ICNNB'05. p. 490-493 4 p. 1614660. (Proceedings of 2005 International Conference on Neural Networks and Brain Proceedings, ICNNB'05; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    1 Scopus citations
  • 2004

    Phylogenetic reconstruction from arbitrary gene-order data

    Tang, J., Moret, B. M. E., Cui, L. & DePamphilis, C. W., 2004, Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004. p. 592-599 8 p. (Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    23 Scopus citations