Computer Science and Engineering

Postal address
United States

Mohamed Khaled Almekkawy
- Computer Science and Engineering - Assistant Professor
Person: Academic
20112025
Anton Bankevich
- Computer Science and Engineering - Assistant Professor
- Huck Institutes of the Life Sciences
Person: Academic
20122025
Guohong Cao
- Computer Science and Engineering - Professor
Person: Academic
19982024
Kyusun Choi
- Computer Science and Engineering - Associate Professor
Person: Academic
19922021
Robert Collins
- Computer Science and Engineering - Associate Professor
Person: Academic
19882023
Chitaranjan Das
- Computer Science and Engineering - Distinguished Professor
Person: Academic
19852025
Debarati Das
- Computer Science and Engineering - Assistant Professor
Person: Academic
20152025
Oren Zaak Gall
- Computer Science and Engineering - Assistant Research Professor
Person: Academic
20092020
Mahanth Gowda
- Computer Science and Engineering - Associate Professor
Person: Academic
20092024
Sean Hallgren
- Computer Science and Engineering - Professor
Person: Academic
19992023

224879 Citations
188 h-index
3144 Conference contribution
1513 Article
329 Conference article
247 Paper
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A Data-Driven Deep Learning Framework for Prediction of Traffic Crashes at Road Intersections
Wang, M., Lee, W. C., Liu, N., Fu, Q., Wan, F. & Yu, G., Jan 2025, In: Applied Sciences (Switzerland). 15, 2, 752.
Research output: Contribution to journal › Article › peer-review

Open Access
A designed synthetic microbiota provides insight to community function in Clostridioides difficile resistance
Tian, S., Kim, M. S., Zhao, J., Heber, K., Hao, F., Koslicki, D., Tian, S., Singh, V., Patterson, A. D. & Bisanz, J. E., Mar 12 2025, In: Cell Host and Microbe. 33, 3, p. 373-387.e9
Research output: Contribution to journal › Article › peer-review

Open Access
1 Scopus citations
Analysis of metagenomic data
Liu, S., Rodriguez, J. S., Munteanu, V., Ronkowski, C., Sharma, N. K., Alser, M., Andreace, F., Blekhman, R., Błaszczyk, D., Chikhi, R., Crandall, K. A., Della Libera, K., Francis, D., Frolova, A., Gancz, A. S., Huntley, N. E., Jaiswal, P., Kosciolek, T., Łabaj, P. P. & Łabaj, W. & 20 others, Luan, T., Mason, C., Moustafa, A. M., Muralidharan, H. S., Mutlu, O., Ghiasi, N. M., Rahnavard, A., Sun, F., Tian, S., Tierney, B. T., Van Syoc, E., Vicedomini, R., Zackular, J. P., Zelikovsky, A., Zielińska, K., Ganda, E., Davenport, E. R., Pop, M., Koslicki, D. & Mangul, S., Dec 2025, In: Nature Reviews Methods Primers. 5, 1, 5.
Research output: Contribution to journal › Article › peer-review
2 Scopus citations
A physics-informed clustering approach for ultrasonics-based nondestructive evaluation
Skiadopoulos, M., Bozek, E. P., Srinivas Pillarisetti, L. S., Kifer, D. & Shokouhi, P., Sep 2025, In: NDT and E International. 154, 103362.
Research output: Contribution to journal › Article › peer-review
A Study on the Impact of Temperature-Dependent Ferroelectric Switching Behavior in 3D Memory Architecture
Parekh, V. D., Xiao, Y., Xu, Y., Zhao, Z., Jiang, Z., Biswas, R., George, S., Ni, K. & Narayanan, V., 2025, Proceedings - 38th International Conference on VLSI Design, VLSID 2025 - held concurrently with 24th International Conference on Embedded Systems, ES 2025. IEEE Computer Society, p. 392-397 6 p. (Proceedings of the IEEE International Conference on VLSI Design).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Automated Assessment of Creativity in Multilingual Narratives
Luchini, S. A., Moosa, I. M., Patterson, J. D., Johnson, D., Baas, M., Barbot, B., Bashmakova, I., Benedek, M., Chen, Q., Corazza, G. E., Forthmann, B., Goecke, B., Said-Metwaly, S., Karwowski, M., Kenett, Y. N., Lebuda, I., Lubart, T., Miroshnik, K. G., Obialo, F. K. & Ovando-Tellez, M. & 8 others, Primi, R., Puente-Díaz, R., Stevenson, C., Volle, E., Zielińska, A., van Hell, J. G., Yin, W. & Beaty, R. E., 2025, (Accepted/In press) In: Psychology of Aesthetics, Creativity, and the Arts.
Research output: Contribution to journal › Article › peer-review

Open Access
2 Scopus citations
Breaking the Two Approximation Barrier for Various Consensus Clustering Problems
Das, D. & Kumar, A., 2025, Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2025. Association for Computing Machinery, p. 323-372 50 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms; vol. 1).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
CloseRead: a tool for assessing assembly errors in immunoglobulin loci applied to vertebrate long-read genome assemblies
Zhu, Y., Watson, C., Safonova, Y., Pennell, M. & Bankevich, A., Dec 2025, In: Genome biology. 26, 1, 131.
Research output: Contribution to journal › Article › peer-review
Complete sequencing of ape genomes
Yoo, D. A., Rhie, A., Hebbar, P., Antonacci, F., Logsdon, G. A., Solar, S. J., Antipov, D., Pickett, B. D., Safonova, Y., Montinaro, F., Luo, Y., Malukiewicz, J., Storer, J. M., Lin, J., Sequeira, A. N., Mangan, R. J., Hickey, G., Monfort Anez, G., Balachandran, P. & Bankevich, A. & 103 others, Beck, C. R., Biddanda, A., Borchers, M., Bouffard, G. G., Brannan, E., Brooks, S. Y., Carbone, L., Carrel, L., Chan, A. P., Crawford, J., Diekhans, M., Engelbrecht, E., Feschotte, C., Formenti, G., Garcia, G. H., de Gennaro, L., Gilbert, D., Green, R. E., Guarracino, A., Gupta, I., Haddad, D., Han, J., Harris, R. S., Hartley, G. A., Harvey, W. T., Hiller, M., Hoekzema, K., Houck, M. L., Jeong, H., Kamali, K., Kellis, M., Kille, B., Lee, C., Lee, Y., Lees, W., Lewis, A. P., Li, Q., Loftus, M., Loh, Y. H. E., Loucks, H., Ma, J., Mao, Y., Martinez, J. F. I., Masterson, P., McCoy, R. C., McGrath, B., McKinney, S., Meyer, B. S., Miga, K. H., Mohanty, S. K., Munson, K. M., Pal, K., Pennell, M., Pevzner, P. A., Porubsky, D., Potapova, T., Ringeling, F. R., Rocha, J. L., Ryder, O. A., Sacco, S., Saha, S., Sasaki, T., Schatz, M. C., Schork, N. J., Shanks, C., Smeds, L., Son, D. R., Steiner, C., Sweeten, A. P., Tassia, M. G., Thibaud-Nissen, F., Torres-González, E., Trivedi, M., Wei, W., Wertz, J., Yang, M., Zhang, P., Zhang, S., Zhang, Y., Zhang, Z., Zhao, S. A., Zhu, Y., Jarvis, E. D., Gerton, J. L., Rivas-González, I., Paten, B., Szpiech, Z. A., Huber, C. D., Lenz, T. L., Konkel, M. K., Yi, S. V., Canzar, S., Watson, C. T., Sudmant, P. H., Molloy, E., Garrison, E., Lowe, C. B., Ventura, M., O’Neill, R. J., Koren, S., Makova, K. D., Phillippy, A. M. & Eichler, E. E., May 8 2025, In: Nature. 641, 8062, p. 401-418 18 p., aae0344.
Research output: Contribution to journal › Article › peer-review
4 Scopus citations
Correcting the distribution of batch normalization signals for Trojan mitigation
Li, X., Xiang, Z., Miller, D. J. & Kesidis, G., Jan 21 2025, In: Neurocomputing. 614, 128752.
Research output: Contribution to journal › Article › peer-review

48 Active
109 Finished

SaTC: CORE: Small: Utilizing Untrusted Machine Learning Services Safely via Privacy-Preserving User Data Embedding
Maeng, K. (PI) & Kifer, D. (CoPI)
National Science Foundation
10/1/24 → 9/30/27
Project: Research project
Planning: DCL EPSCOR: CISE Large: Distributed Edge Intelligence in Support of Next-Generation Applications
Silvestri, S. (PI), La Porta, T. (CoPI), He, T. (CoPI), Ionel, D. M. (CoPI) & Siddique, M. A. (CoPI)
National Science Foundation
10/1/24 → 9/30/25
Project: Research project
CAREER: Trustworthy Human-Centered Summarization
Zhang, R. (PI)
National Science Foundation
9/15/24 → 8/31/29
Project: Research project
EAGER: Integrating Small and Medium Sized Manufacturing Enterprises (SMEs) into the Next Generation Manufacturing Ecosystems for National Security and Self Sufficiency
Tirupatikumara, S. R. (PI), Griffin, P. M. (CoPI) & Madduri, K. (CoPI)
National Science Foundation
9/1/24 → 8/31/26
Project: Research project
EAGER: Clustering, Auto-Encoding, and Generative Modelling of 3D Object Representations for Manufacturing
Kesidis, G. (PI) & Miller, D. J. (CoPI)
National Science Foundation
5/15/24 → 4/30/26
Project: Research project
CAREER: A Theoretical Exploration of Efficient and Accurate Clustering Algorithms
Das, D. (PI)
National Science Foundation
5/1/24 → 4/30/29
Project: Research project
Collaborative Research: SaTC: CORE: Medium: Differentially Private SQL with flexible privacy modeling, machine-checked system design, and accuracy optimization
Kifer, D. (PI) & Zhang, D. (CoPI)
National Science Foundation
5/1/24 → 4/30/28
Project: Research project
CAREER: Building Secure Applications with Non-Static Information Flow Policies
Zhang, D. (PI)
National Science Foundation
10/1/23 → 6/30/25
Project: Research project
Collaborative Proposal: SaTC: Frontiers: Center for Distributed Confidential Computing (CDCC)
Zhang, D. (PI)
National Science Foundation
10/1/23 → 9/30/27
Project: Research project
FET: Small: An Integrated Framework for the Optimal Control of Open Quantum Systems --- Theory, Quantum Algorithms, and Applications
Wang, C. (PI) & Li, X. (CoPI)
National Science Foundation
10/1/23 → 9/30/26
Project: Research project

Computer Science and Engineering

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Collaborations and top research areas from the last five years

Dive into details

Mohamed Khaled Almekkawy

Anton Bankevich

Guohong Cao

Kyusun Choi

Robert Collins

Chitaranjan Das

Debarati Das

Oren Zaak Gall

Mahanth Gowda

Sean Hallgren

A Data-Driven Deep Learning Framework for Prediction of Traffic Crashes at Road Intersections

A designed synthetic microbiota provides insight to community function in Clostridioides difficile resistance

Analysis of metagenomic data

A physics-informed clustering approach for ultrasonics-based nondestructive evaluation

A Study on the Impact of Temperature-Dependent Ferroelectric Switching Behavior in 3D Memory Architecture

Automated Assessment of Creativity in Multilingual Narratives

Breaking the Two Approximation Barrier for Various Consensus Clustering Problems

CloseRead: a tool for assessing assembly errors in immunoglobulin loci applied to vertebrate long-read genome assemblies

Complete sequencing of ape genomes

Correcting the distribution of batch normalization signals for Trojan mitigation

SaTC: CORE: Small: Utilizing Untrusted Machine Learning Services Safely via Privacy-Preserving User Data Embedding

Planning: DCL EPSCOR: CISE Large: Distributed Edge Intelligence in Support of Next-Generation Applications

CAREER: Trustworthy Human-Centered Summarization

EAGER: Integrating Small and Medium Sized Manufacturing Enterprises (SMEs) into the Next Generation Manufacturing Ecosystems for National Security and Self Sufficiency

EAGER: Clustering, Auto-Encoding, and Generative Modelling of 3D Object Representations for Manufacturing

CAREER: A Theoretical Exploration of Efficient and Accurate Clustering Algorithms

Collaborative Research: SaTC: CORE: Medium: Differentially Private SQL with flexible privacy modeling, machine-checked system design, and accuracy optimization

CAREER: Building Secure Applications with Non-Static Information Flow Policies

Collaborative Proposal: SaTC: Frontiers: Center for Distributed Confidential Computing (CDCC)

FET: Small: An Integrated Framework for the Optimal Control of Open Quantum Systems --- Theory, Quantum Algorithms, and Applications

Computer Science and Engineering

Fingerprint

Collaborations and top research areas from the last five years

Profiles

Research output

Projects