Institute for Personalized Medicine

Research output

Research output per year 1975 2015 2017 2018 2019 2020 2021 2022 2023 2024

• 53857 Citations
• 101 h-index
• 432 Article
• 23 Review article
• 11 Comment/debate
• 10 Conference contribution
• 21 More
  • 9 Letter
  • 5 Chapter
  • 5 Short survey
  • 1 Meeting Abstract
  • 1 Editorial

Research output per year

Research output per year

Search results

• 2024

  Acute kidney injury in hospitalized children with proteinuria: A multicenter retrospective analysis

  Baggett, K. H., Manghi, T., Walter, V., Thomas, N. J., Freeman, M. A. & Krawiec, C., Mar 2024, In: PloS one. 19, 3 March, e0298463.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Association of medical comorbidities in obese subjects diagnosed with heparin-induced thrombocytopenia

  Darok, M., Daly, A., Walter, V. & Krawiec, C., Jan 1 2024, In: SAGE Open Medicine. 12

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Convergent Mutations and Single Nucleotide Variants in Mitochondrial Genomes of Modern Humans and Neanderthals

  Ferreira, R. C., Rodrigues, C. R., Broach, J. R. & Briones, M. R. S., Apr 2024, In: International journal of molecular sciences. 25, 7, 3785.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Dissecting heritability, environmental risk, and air pollution causal effects using > 50 million individuals in MarketScan

  McGuire, D., Markus, H., Yang, L., Xu, J., Montgomery, A., Berg, A., Li, Q., Carrel, L., Liu, D. J. & Jiang, B., Dec 2024, In: Nature communications. 15, 1, 5357.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets

  Xu, X., Khunsriraksakul, C., Eales, J. M., Rubin, S., Scannali, D., Saluja, S., Talavera, D., Markus, H., Wang, L., Drzal, M., Maan, A., Lay, A. C., Prestes, P. R., Regan, J., Diwadkar, A. R., Denniff, M., Rempega, G., Ryszawy, J., Król, R. & Dormer, J. P. & 18 others, Szulinska, M., Walczak, M., Antczak, A., Matías-García, P. R., Waldenberger, M., Woolf, A. S., Keavney, B., Zukowska-Szczechowska, E., Wystrychowski, W., Zywiec, J., Bogdanski, P., Danser, A. H. J., Samani, N. J., Guzik, T. J., Morris, A. P., Liu, D. J., Charchar, F. J. & Tomaszewski, M., Dec 2024, In: Nature communications. 15, 1, 2359.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  3 Scopus citations

• Integrating Optical Genome Mapping and Whole Genome Sequencing in Somatic Structural Variant Detection

  Budurlean, L., Tukaramrao, D. B., Zhang, L., Dovat, S. & Broach, J., Mar 2024, In: Journal of Personalized Medicine. 14, 3, 291.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Integrating single cell expression quantitative trait loci summary statistics to understand complex trait risk genes

  Wang, L., Khunsriraksakul, C., Markus, H., Chen, D., Zhang, F., Chen, F., Zhan, X., Carrel, L., Liu, D. J. & Jiang, B., Dec 2024, In: Nature communications. 15, 1, 4260.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Targeting Tyro3, Axl, and MerTK Receptor Tyrosine Kinases Significantly Sensitizes Triple-Negative Breast Cancer to CDK4/6 Inhibition

  Demirsoy, S., Tran, H., Liu, J., Li, Y., Yang, S., Aregawi, D., Glantz, M. J., Jacob, N. K., Walter, V., Schell, T. D. & Olmez, I., Jun 2024, In: Cancers. 16, 12, 2253.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2023

  Abdominal pain is associated with an increased risk of future healthcare resource utilization in inflammatory bowel disease

  Zubrzycka, I., Bogale, K., Stuart, A., Cesaire, M., Walter, V., Dalessio, S., Tinsley, A., Williams, E., Clarke, K. & Coates, M. D., Dec 2023, In: International Journal of Colorectal Disease. 38, 1, 213.

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Association of surfactant protein A2 with acute respiratory failure in children

  Emery, L., Kane, E., Anderson-Fears, K., Liu, D., Floros, J. & Gandhi, C. K., Jan 1 2023, In: Pediatrics International. 65, 1, e15672.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Concurrent durvalumab and radiation therapy (DUART) followed by adjuvant durvalumab in patients with localized urothelial cancer of bladder: Results from phase II study, BTCRC-GU15-023

  Joshi, M., Tuanquin, L., Zhu, J., Walter, V., Schell, T., Kaag, M., Kilari, D., Liao, J., Holder, S. L., Emamekhoo, H., Sankin, A., Merrill, S., Zheng, H., Warrick, J., Hauke, R., Gartrel, B., Stein, M., Drabick, J., Degraff, D. J. & Zakharia, Y., Feb 23 2023, In: Journal for ImmunoTherapy of Cancer. 11, 2, e006551.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • durvalumab 100%
  • Urinary Bladder Neoplasms 55%
  • Radiotherapy 40%
  • Progression-Free Survival 35%
  • Survival 17%
  12 Scopus citations

• Genome-wide structural variant analysis identifies risk loci for non-Alzheimer's dementias

  PROSPECT Consortium, The American Genome Center, International LBD Genomics Consortium & International ALS/FTD Consortium, Jun 14 2023, In: Cell Genomics. 3, 6, 100316.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  8 Scopus citations

• Global role of IGF2BP1 in controlling the expression of Wnt/β-catenin-regulated genes in colorectal cancer cells

  Singh, V., Walter, V., Elcheva, I., Imamura Kawasawa, Y. & Spiegelman, V. S., 2023, In: Frontiers in Cell and Developmental Biology. 11, 1236356.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  4 Scopus citations

• Gut microbiome dynamics and associations with mortality in critically ill patients

  Salameh, T. J., Roth, K., Schultz, L., Ma, Z., Bonavia, A. S., Broach, J. R., Hu, B. & Howrylak, J. A., Dec 2023, In: Gut Pathogens. 15, 1, 66.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• Immune Responses in Oral Papillomavirus Clearance in the MmuPV1 Mouse Model

  Brendle, S. A., Li, J. J., Walter, V., Schell, T., Kozak, M., Balogh, K. K., Lu, S., Christensen, N. D., Zhu, Y., El-Bayoumy, K. & Hu, J., Dec 2023, In: Pathogens. 12, 12, 1452.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  2 Scopus citations

• Impact of the COVID-19 Pandemic on Diagnostic Frequency of Febrile Seizures: An Electronic Health Record Database Observational Study

  Cadet, K., Ceneviva, G. D., Walter, V., Thomas, N. J. & Krawiec, C., Jan 2023, In: The Neurohospitalist. 13, 1, p. 46-52 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Febrile Seizures 100%
  • Coronavirus 97%
  • Pandemics 82%
  • Electronic Health Records 79%
  • Observational Studies 60%
  7 Scopus citations

• Infection diagnosis in hydrocephalus CT images: a domain enriched attention learning approach

  Yu, M., Peterson, M. R., Cherukuri, V., Hehnly, C., Mbabazi-Kabachelor, E., Mulondo, R., Nsubuga Kaaya, B., Broach, J. R., Schiff, S. J. & Monga, V., Jun 1 2023, In: Journal of neural engineering. 20, 3, 036033.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Lifestyle Factors and Silent Inflammatory Bowel Disease

  Coates, M. D., Dalessio, S., Stuart, A., Walter, V., Tinsley, A., Clarke, K. & Williams, E. D., Dec 3 2023, In: Inflammatory Intestinal Diseases. 8, 4, p. 153-160 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Lifestyle Factors Associated with Abdominal Pain in Quiescent Inflammatory Bowel Disease

  Coates, M. D., Dalessio, S., Walter, V., Stuart, A., Tinsley, A., Williams, E. D. & Clarke, K., Nov 2023, In: Digestive Diseases and Sciences. 68, 11, p. 4156-4165 10 p.

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• Multi-ancestry and multi-trait genome-wide association meta-analyses inform clinical risk prediction for systemic lupus erythematosus

  Khunsriraksakul, C., Li, Q., Markus, H., Patrick, M. T., Sauteraud, R., McGuire, D., Wang, X., Wang, C., Wang, L., Chen, S., Shenoy, G., Li, B., Zhong, X., Olsen, N. J., Carrel, L., Tsoi, L. C., Jiang, B. & Liu, D. J., Dec 2023, In: Nature communications. 14, 1, 668.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • genome 100%
  • Genome-Wide Association Study 80%
  • drugs 77%
  • Systemic Lupus Erythematosus 72%
  • monocytes 64%
  17 Scopus citations

• Multi-ancestry transcriptome-wide association analyses yield insights into tobacco use biology and drug repurposing

  Chen, F., Wang, X., Jang, S. K., Quach, B. C., Weissenkampen, J. D., Khunsriraksakul, C., Yang, L., Sauteraud, R., Albert, C. M., Allred, N. D. D., Arnett, D. K., Ashley-Koch, A. E., Barnes, K. C., Barr, R. G., Becker, D. M., Bielak, L. F., Bis, J. C., Blangero, J., Boorgula, M. P. & Chasman, D. I. & 70 others, Chavan, S., Chen, Y. D. I., Chuang, L. M., Correa, A., Curran, J. E., David, S. P., Fuentes, L. D. L., Deka, R., Duggirala, R., Faul, J. D., Garrett, M. E., Gharib, S. A., Guo, X., Hall, M. E., Hawley, N. L., He, J., Hobbs, B. D., Hokanson, J. E., Hsiung, C. A., Hwang, S. J., Hyde, T. M., Irvin, M. R., Jaffe, A. E., Johnson, E. O., Kaplan, R., Kardia, S. L. R., Kaufman, J. D., Kelly, T. N., Kleinman, J. E., Kooperberg, C., Lee, I. T., Levy, D., Lutz, S. M., Manichaikul, A. W., Martin, L. W., Marx, O., McGarvey, S. T., Minster, R. L., Moll, M., Moussa, K. A., Naseri, T., North, K. E., Oelsner, E. C., Peralta, J. M., Peyser, P. A., Psaty, B. M., Rafaels, N., Raffield, L. M., Reupena, M. S., Rich, S. S., Rotter, J. I., Schwartz, D. A., Shadyab, A. H., Sheu, W. H. H., Sims, M., Smith, J. A., Sun, X., Taylor, K. D., Telen, M. J., Watson, H., Weeks, D. E., Weir, D. R., Yanek, L. R., Young, K. A., Young, K. L., Zhao, W., Hancock, D. B., Jiang, B., Vrieze, S. & Liu, D. J., Feb 2023, In: Nature Genetics. 55, 2, p. 291-300 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  21 Scopus citations

• Native American genetic ancestry and pigmentation allele contributions to skin color in a Caribbean population

  Ang, K. C., Canfield, V. A., Foster, T. C., Harbaugh, T. D., Early, K. A., Harter, R. L., Reid, K. P., Leong, S. L., Kawasawa, Y. I., Liu, D. J., Hawley, J. W. & Cheng, K. C., Jun 9 2023, In: eLife. 12

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Neonatal Paenibacilliosis: Paenibacillus Infection as a Novel Cause of Sepsis in Term Neonates With High Risk of Sequelae in Uganda

  Ericson, J. E., Burgoine, K., Kumbakumba, E., Ochora, M., Hehnly, C., Bajunirwe, F., Bazira, J., Fronterre, C., Hagmann, C., Kulkarni, A. V., Kumar, M. S., Magombe, J., Mbabazi-Kabachelor, E., Morton, S. U., Movassagh, M., Mugamba, J., Mulondo, R., Natukwatsa, D., Kaaya, B. N. & Olupot-Olupot, P. & 12 others, Onen, J., Sheldon, K., Smith, J., Ssentongo, P., Ssenyonga, P., Warf, B., Wegoye, E., Zhang, L., Kiwanuka, J., Paulson, J. N., Broach, J. R. & Schiff, S. J., Sep 1 2023, In: Clinical Infectious Diseases. 77, 5, p. 768-775 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  5 Scopus citations

• Optical genome mapping in acute myeloid leukemia: a multicenter evaluation

  Levy, B., Baughn, L. B., Akkari, Y., Chartrand, S., LaBarge, B., Claxton, D., Lennon, P. A., Cujar, C., Kolhe, R., Kroeger, K., Pitel, B., Sahajpal, N., Sathanoori, M., Vlad, G., Zhang, L., Fang, M., Kanagal-Shamanna, R. & Broach, J. R., Aug 11 2023, In: Blood Advances. 7, 7, p. 1297-1307 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  44 Scopus citations

• Orai3 and Orai1 mediate CRAC channel function and metabolic reprogramming in B cells

  Emrich, S. M., Yoast, R. E., Zhang, X., Fike, A. J., Wang, Y. H., Bricker, K. N., Tao, A. Y., Xin, P., Walter, V., Johnson, M. T., Pathak, T., Straub, A. C., Feske, S., Rahman, Z. S. M. & Trebak, M., Feb 21 2023, In: eLife. 12

  Research output: Contribution to journal › Article › peer-review

  Open Access
  8 Scopus citations

• Paenibacillus spp infection among infants with postinfectious hydrocephalus in Uganda: an observational case-control study

  Morton, S. U., Hehnly, C., Burgoine, K., Ssentongo, P., Ericson, J. E., Kumar, M. S., Hagmann, C., Fronterre, C., Smith, J., Movassagh, M., Streck, N., Bebell, L. M., Bazira, J., Kumbakumba, E., Bajunirwe, F., Mulondo, R., Mbabazi-Kabachelor, E., Nsubuga, B. K., Natukwatsa, D. & Nalule, E. & 19 others, Magombe, J., Erickson, T., Ngonzi, J., Ochora, M., Olupot-Olupot, P., Onen, J., Ssenyonga, P., Mugamba, J., Warf, B. C., Kulkarni, A. V., Lane, J., Whalen, A. J., Zhang, L., Sheldon, K., Meier, F. A., Kiwanuka, J., Broach, J. R., Paulson, J. N. & Schiff, S. J., Aug 2023, In: The Lancet Microbe. 4, 8, p. e601-e611

  Research output: Contribution to journal › Article › peer-review

  Open Access
  3 Scopus citations

• Polysubstance use in inflammatory bowel disease is associated with increased risk of emergency department visits: a longitudinal study

  Bogale, K., Zubrzycka, I., Stuart, A., Cesaire, M., Walter, V., Tinsley, A., Williams, E., Clarke, K. & Coates, M. D., Nov 23 2023, In: Annals of Gastroenterology. 36, 6, p. 630-636 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Potential Early Markers for Breast Cancer: A Proteomic Approach Comparing Saliva and Serum Samples in a Pilot Study

  Sinha, I., Fogle, R. L., Gulfidan, G., Stanley, A. E., Walter, V., Hollenbeak, C. S., Arga, K. Y. & Sinha, R., Feb 2023, In: International journal of molecular sciences. 24, 4, 4164.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • saliva 100%
  • Proteomics 87%
  • serums 78%
  • markers 71%
  • breast 69%
  9 Scopus citations

• Sexually dimorphic effect of H-ferritin genetic manipulation on survival and tumor microenvironment in a mouse model of glioblastoma

  Pandya Shesh, B., Walter, V., Palsa, K., Slagle-Webb, B., Neely, E., Schell, T. & Connor, J. R., Sep 2023, In: Journal of neuro-oncology. 164, 3, p. 569-586 18 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Transcriptional Response of Multi-Stress-Tolerant Saccharomyces cerevisiae to Sequential Stresses

  Costa, A. C. T., Russo, M., Fernandes, A. A. R., Broach, J. R. & Fernandes, P. M. B., Feb 2023, In: Fermentation. 9, 2, 195.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Fermentation 100%
  • Saccharomyces cerevisiae 97%
  • Yeasts 85%
  • yeasts 70%
  • fermentation 55%
  4 Scopus citations

• Urothelium-Specific Expression of Mutationally Activated Pik3ca Initiates Early Lesions of Noninvasive Bladder Cancer

  Shuman, L., Pham, J., Wildermuth, T., Wu, X. R., Walter, V., Warrick, J. I. & DeGraff, D. J., Dec 2023, In: American Journal of Pathology. 193, 12, p. 2133-2143 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations
• 2022

  Analysis of KIR gene variants in The Cancer Genome Atlas and UK Biobank using KIRCLE

  Gao, G. F., Liu, D., Zhan, X. & Li, B., Dec 2022, In: BMC Biology. 20, 1, 191.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Immunoglobulin Genes 100%
  • allele 88%
  • Atlases 84%
  • atlas 83%
  • immunoglobulins 76%
  4 Scopus citations

• Association of Spinal Cord Stimulator Implantation with Persistent Opioid Use in Patients with Postlaminectomy Syndrome

  Vu, T. N., Khunsriraksakul, C., Vorobeychik, Y., Liu, A., Sauteraud, R., Shenoy, G., Liu, D. J. & Cohen, S. P., 2022, (Accepted/In press) In: JAMA network open. e2145876.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Opioid Analgesics 100%
  • Spinal Cord Stimulation 96%
  • Spinal Cord 92%
  • Prescriptions 15%
  • Therapeutics 6%
  17 Scopus citations

• A transcriptional network of cell cycle dysregulation in noninvasive papillary urothelial carcinoma

  Warrick, J. I., Knowles, M. A., Hurst, C. D., Shuman, L., Raman, J. D., Walter, V., Putt, J., Dyrskjøt, L., Groeneveld, C., Castro, M. A. A., Robertson, A. G. & DeGraff, D. J., Dec 2022, In: Scientific reports. 12, 1, 16538.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Papillary Carcinoma 100%
  • Cell Cycle 64%
  • Transcription Factors 61%
  • Neoplasms 14%
  • Carcinoma 11%
  5 Scopus citations

• Cell environment shapes TDP-43 function with implications in neuronal and muscle disease

  NYGC ALS Consortium, Dec 2022, In: Communications Biology. 5, 1, 314.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • muscular diseases 100%
  • DNA-binding proteins 88%
  • Cell Shape 87%
  • DNA-Binding Proteins 83%
  • Shape 48%
  28 Scopus citations

• Current utilization of interosseous access in pediatrics: a population-based analysis using an EHR database, TriNetX

  Hoskins, M., Sefick, S., Zurca, A. D., Walter, V., Thomas, N. J. & Krawiec, C., Dec 2022, In: International Journal of Emergency Medicine. 15, 1, 65.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Pediatrics 100%
  • Databases 93%
  • Heart Arrest 77%
  • Population 60%
  • Seizures 60%
  2 Scopus citations

• Cytomegalovirus infections in infants in Uganda: Newborn-mother pairs, neonates with sepsis, and infants with hydrocephalus

  Hehnly, C., Ssentongo, P., Bebell, L. M., Burgoine, K., Bazira, J., Fronterre, C., Kumbakumba, E., Mulondo, R., Mbabazi-Kabachelor, E., Morton, S. U., Ngonzi, J., Ochora, M., Olupot-Olupot, P., Mugamba, J., Onen, J., Roberts, D. J., Sheldon, K., Sinnar, S. A., Smith, J. & Ssenyonga, P. & 6 others, Kiwanuka, J., Paulson, J. N., Meier, F. A., Ericson, J. E., Broach, J. R. & Schiff, S. J., May 2022, In: International Journal of Infectious Diseases. 118, p. 24-33 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Uganda 100%
  • Cytomegalovirus Infections 93%
  • Hydrocephalus 88%
  • Cytomegalovirus 73%
  • Sepsis 68%
  2 Scopus citations

• Depo Medroxyprogesterone (DMPA) Promotes Papillomavirus Infections but Does Not Accelerate Disease Progression in the Anogenital Tract of a Mouse Model

  Hu, J., Brendle, S. A., Li, J. J., Walter, V., Cladel, N. M., Cooper, T., Shearer, D. A., Balogh, K. K. & Christensen, N. D., May 2022, In: Viruses. 14, 5, 980.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • N,N-dimethyl-4-anisidine 100%
  • Medroxyprogesterone 89%
  • Papillomavirus Infections 63%
  • Disease Progression 45%
  • Contraceptive Agents 30%
  6 Scopus citations

• Differential richness inference for 16S rRNA marker gene surveys

  Kumar, M. S., Slud, E. V., Hehnly, C., Zhang, L., Broach, J., Irizarry, R. A., Schiff, S. J. & Paulson, J. N., Dec 2022, In: Genome biology. 23, 1, 166.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • rRNA Genes 100%
  • 16S Ribosomal RNA 99%
  • Microbiota 94%
  • marker 80%
  • gene 72%
  4 Scopus citations

• DiNAMIC.Duo: detecting somatic DNA copy number differences without a normal reference

  Walter, V., Choi, H. Y., Zhao, X., Gao, Y., Holt, J. & Hayes, D. N., Sep 15 2022, In: Bioinformatics. 38, 18, p. 4415-4417 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • DNA 100%
  • Tumors 99%
  • Tumor 44%
  • Genomics 33%
  • Neoplasms 31%

• Evaluation of reported medical services provided to pediatric viral bronchiolitis diagnoses during the COVID-19 pandemic

  Krawiec, C., Williams, D., Walter, V. & Thomas, N. J., May 2022, In: Respiratory Medicine and Research. 81, 100909.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Viral Bronchiolitis 100%
  • Coronavirus 74%
  • Pandemics 63%
  • Bronchiolitis 40%
  • Pediatrics 38%
  2 Scopus citations

• FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation

  Warrick, J. I., Hu, W., Yamashita, H., Walter, V., Shuman, L., Craig, J. M., Gellert, L. L., Castro, M. A. A., Robertson, A. G., Kuo, F., Ostrovnaya, I., Sarungbam, J., Chen, Y. B., Gopalan, A., Sirintrapun, S. J., Fine, S. W., Tickoo, S. K., Kim, K., Thomas, J. & Karan, N. & 31 others, Gao, S. P., Clinton, T. N., Lenis, A. T., Chan, T. A., Chen, Z., Rao, M., Hollman, T. J., Li, Y., Socci, N. D., Chavan, S., Viale, A., Mohibullah, N., Bochner, B. H., Pietzak, E. J., Teo, M. Y., Iyer, G., Rosenberg, J. E., Bajorin, D. F., Kaag, M., Merrill, S. B., Joshi, M., Adam, R., Taylor, J. A., Clark, P. E., Raman, J. D., Reuter, V. E., Chen, Y., Funt, S. A., Solit, D. B., DeGraff, D. J. & Al-Ahmadie, H. A., Dec 2022, In: Nature communications. 13, 1, 6575.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • bladder 100%
  • Plastic Property 85%
  • Urinary Bladder Neoplasms 70%
  • cancer 69%
  • Heterogeneity 68%
  18 Scopus citations

• Frequency and Results of Pregnancy Screening in Critically Ill Adolescents in Multiple Health Care Organizations

  Roberts, C. M., Williams, D., Ceneviva, G. D., Walter, V., Thomas, N. J. & Krawiec, C., Nov 2022, In: Journal of Adolescent Health. 71, 5, p. 552-558 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Critical Illness 100%
  • pregnancy 91%
  • Organizations 89%
  • health care 77%
  • Delivery of Health Care 65%

• Genetic correlation, pleiotropy, and causal associations between substance use and psychiatric disorder

  Jang, S. K., Saunders, G., Liu, M. Z., Jiang, Y., Liu, D. J. & Vrieze, S., Apr 7 2022, In: Psychological medicine. 52, 5, p. 968-978 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Genetic Pleiotropy 100%
  • etiology 65%
  • bipolar depression 56%
  • Substance-Related Disorders 55%
  • Mental Disorders 51%
  43 Scopus citations

• Genetic diversity fuels gene discovery for tobacco and alcohol use

  23andMe Research Team & The Biobank Japan Project, Dec 22 2022, In: Nature. 612, 7941, p. 720-724 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Genetic Association Studies 100%
  • Tobacco Use 98%
  • Genetic Variation 90%
  • Alcohols 70%
  • Sample Size 55%
  138 Scopus citations

• Heavy metals as risk factors for human diseases – a Bayesian network approach

  Perrelli, M., Wu, R., Liu, D. J., Lucchini, R. G., Del Bosque-Plata, L., Vergare, M. J., Akhter, M. P., Ott, J. & Gragnoli, C., 2022, In: European Review for Medical and Pharmacological Sciences. 26, 24, p. 9275-9310 36 p.

  Research output: Contribution to journal › Article › peer-review

  • Bayes Theorem 100%
  • Heavy Metals 97%
  • Poisons 20%
  • Environmental Pollution 19%
  • Endocrine System 16%
  5 Scopus citations

• Human Papillomavirus Integration Strictly Correlates with Global Genome Instability in Head and Neck Cancer

  Labarge, B., Hennessy, M., Zhang, L., Goldrich, D., Chartrand, S., Purnell, C., Wright, S., Goldenberg, D. & Broach, J. R., Sep 2022, In: Molecular Cancer Research. 20, 9, p. 1420-1428 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Virus Integration 100%
  • Genomic Instability 99%
  • Head and Neck Neoplasms 91%
  • Genome 61%
  • Human Genome 38%
  11 Scopus citations

• Hydrophilic But Not Hydrophobic Surfactant Protein Genetic Variants Are Associated With Severe Acute Respiratory Syncytial Virus Infection in Children

  Depicolzuane, L. C., Roberts, C. M., Thomas, N. J., Anderson-Fears, K., Liu, D., Barbosa, J. P. P., Souza, F. R., Pimentel, A. S., Floros, J. & Gandhi, C. K., Jul 12 2022, In: Frontiers in immunology. 13, 922956.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Respiratory Syncytial Virus Infections 100%
  • Respiratory Syncytial Viruses 90%
  • Surface-Active Agents 80%
  • Proteins 28%
  • Single Nucleotide Polymorphism 23%
  3 Scopus citations

• Integrating 3D genomic and epigenomic data to enhance target gene discovery and drug repurposing in transcriptome-wide association studies

  Khunsriraksakul, C., McGuire, D., Sauteraud, R., Chen, F., Yang, L., Wang, L., Hughey, J., Eckert, S., Dylan Weissenkampen, J., Shenoy, G., Marx, O., Carrel, L., Jiang, B. & Liu, D. J., Dec 2022, In: Nature communications. 13, 1, 3258.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Drug Repositioning 100%
  • genes 85%
  • chromatin 78%
  • Genetic Association Studies 77%
  • drugs 73%
  18 Scopus citations

• MB-SupCon: Microbiome-based Predictive Models via Supervised Contrastive Learning

  Yang, S., Wang, S., Wang, Y., Rong, R., Kim, J., Li, B., Koh, A. Y., Xiao, G., Li, Q., Liu, D. J. & Zhan, X., Aug 15 2022, In: Journal of Molecular Biology. 434, 15, 167693.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Microbiota 100%
  • Learning 74%
  • Metabolome 14%
  • Metabolomics 13%
  • Datasets 9%
  4 Scopus citations