Plant Pathology and Environmental Microbiology

2025

Future Scientists for Sustainable Agricultural Development Through Interdisciplinary Graduate Education

Foster, M. M., Rice, L., Esker, P., Rivers, A. & Foster, D. D., 2025, World Sustainability Series. Springer Science and Business Media Deutschland GmbH, p. 287-305 19 p. (World Sustainability Series; vol. Part F128).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2023

Nematode problems in mushroom cultivation and their sustainable management

Beyer, D. M. & Rinker, D., Jan 1 2023, Nematode Diseases of Crops and Their Sustainable Management. Elsevier, p. 337-347 11 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

2022

Multi-Pronged Investigation of Volatile Compound-Mediated Interactions of Fusarium oxysporum with Plants, Fungi, and Bacteria

Li, N. & Kang, S., 2022, Methods in Molecular Biology. Humana Press Inc., p. 109-127 19 p. (Methods in Molecular Biology; vol. 2391).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Phytobiome Metabarcoding: A Tool to Help Identify Prokaryotic and Eukaryotic Causal Agents of Undiagnosed Tree Diseases

Fearer, C. J., Malacrinò, A., Rosa, C. & Bonello, P., 2022, Methods in Molecular Biology. Humana Press Inc., p. 347-366 20 p. (Methods in Molecular Biology; vol. 2536).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Pure Culture and DNA Sequence-Based Identification of Fusarium from Symptomatic Plants and Diverse Substrates

O’Donnell, K., Laraba, I. & Geiser, D. M., 2022, Methods in Molecular Biology. Humana Press Inc., p. 1-20 20 p. (Methods in Molecular Biology; vol. 2391).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

8 Scopus citations

Time-Lapse Imaging of Root Pathogenesis and Fungal Proliferation Without Physically Disrupting Roots

Kim, H. S., Park, S. Y., Kang, S. & Czymmek, K. J., 2022, Methods in Molecular Biology. Humana Press Inc., p. 153-170 18 p. (Methods in Molecular Biology; vol. 2391).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

2021

Are species concepts outdated for fungi? Intraspecific variation in plant-pathogenic fungi illustrates the need of subspecific categorization

Monte, E., Hermosa, R., Jimenez Gasco, M. D. M. & Jimenez-Diaz, R. M., 2021, Trends in the Systematics of Bacteria and Fungi. Bridge, P. D., Smith, D. & Stackebrandt, E. (eds.). CABI Publishing, p. 301-319

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Plant pathogens as indicators of climate change

Garrett, K. A., Nita, M., De Wolf, E. D., Esker, P. D., Gomez-Montano, L. & Sparks, A. H., Jan 1 2021, Climate Change: Observed Impacts on Planet Earth, Third Edition. Elsevier, p. 499-513 15 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

41 Scopus citations

The Role of Endophytic Insect-Pathogenic Fungi in Biotic Stress Management

Ahmad, I., Jiménez-Gasco, M. D. M. & Barbercheck, M. E., Jan 1 2021, Plant Stress Biology: Strategies and Trends. Springer Singapore, p. 379-400 22 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

The role of endophytic insect-pathogenic fungi in plant growth promotion and protection

Ahmed, I., Jimenez Gasco, M. D. M. & Barbercheck, M. E., 2021, Plant Stress Biology. Giri, B. & Sharma, M. P. (eds.). Springer Nature, p. 379-400

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Virus-resistant crops and trees

Rosa, C., Aug 30 2021, Plant Biotechnology: Experience and Future Prospects: Second Edition. Springer International Publishing, p. 145-160 16 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2020

Ourmiaviruses (Botourmiaviridae)

Accotto, G. P. & Rosa, C., Jan 1 2020, Encyclopedia of Virology: Volume 1-5, Fourth Edition. Elsevier, Vol. 1-5. p. 516-519 4 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2019

A multiplexed CRISPR/cas9 editing system based on the endogenous tRNA processing

Xie, K. & Yang, Y., 2019, Methods in Molecular Biology. Humana Press Inc., p. 63-73 11 p. (Methods in Molecular Biology; vol. 1917).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

9 Scopus citations

The apple fruitlet model system for fire blight disease

Klee, S. M., Sinn, J. P. & McNellis, T. W., 2019, Methods in Molecular Biology. Humana Press Inc., p. 187-198 12 p. (Methods in Molecular Biology; vol. 1991).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

14 Scopus citations

2018

Characterizing mycoviruses

Peyambari, M. & Roossinck, M. J., 2018, Methods in Molecular Biology. Humana Press Inc., p. 13-24 12 p. (Methods in Molecular Biology; vol. 1848).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Scopus citations

Genome-wide association mapping analyses applied to polyamines

Barboza-Barquero, L., Esker, P. & Alcázar, R., 2018, Methods in Molecular Biology. Humana Press Inc., p. 427-432 6 p. (Methods in Molecular Biology; vol. 1694).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

In Memoriam: The Career, Achievements, and Legacy of Milton Zaitlin

Palukaitis, P. & Roossinck, M. J., 2018, Advances in Virus Research. Palukaitis, P. & Roossinck, M. J. (eds.). Academic Press Inc., p. 1-21 21 p. (Advances in Virus Research; vol. 102).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Virus evolution and ecology: Role of viruses in adaptation of life to extreme environments

Roossinck, M. J., Dec 7 2018, Handbook of Astrobiology. CRC Press, p. 677-680 4 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2017

Apoplastic sugar extraction and quantification from wheat leaves infected with biotrophic fungi

Roman-Reyna, V. & Rathjen, J. P., 2017, Methods in Molecular Biology. Humana Press Inc., p. 125-134 10 p. (Methods in Molecular Biology; vol. 1659).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

12 Scopus citations

CRISPR/Cas9-Enabled Multiplex Genome Editing and Its Application

Minkenberg, B., Wheatley, M. & Yang, Y., 2017, Progress in Molecular Biology and Translational Science. Elsevier B.V., p. 111-132 22 p. (Progress in Molecular Biology and Translational Science; vol. 149).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

77 Scopus citations

Cultivation of Pleurotus ostreatus

Estrada, A. E. R. & Pecchia, J., Aug 14 2017, Edible and Medicinal Mushrooms: Technology and Applications. John Wiley and Sons Ltd, p. 339-360 22 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

13 Scopus citations

Small Linear Satellite RNAs

Kim, M. & Roossinck, M. J., Jan 1 2017, Viroids and Satellites. Elsevier Inc., p. 649-658 10 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

2016

Plant Pathogens as Indicators of Climate Change

Garrett, K. A., Nita, M., De Wolf, E. D., Esker, P. D., Gomez-Montano, L. & Sparks, A. H., Jan 1 2016, Climate Change: Observed Impacts on Planet Earth: Second Edition. Elsevier Inc., p. 325-338 14 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

42 Scopus citations

Plant virus diversity and evolution

Stobbe, A. & Roossinck, M. J., Jan 1 2016, Current Research Topics in Plant Virology. Springer International Publishing, p. 197-215 19 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

12 Scopus citations

2015

Does composting eradicate the pathogen responsible for boxwood blight? an outline of future investigations

Harvey, R., Davis, D. & Pecchia, J., Jun 15 2015, Proceedings of the 2014 Annual Meeting of the International Plant Propagators Society. Heuser, C. W. (ed.). International Society for Horticultural Science, p. 211-215 5 p. (Acta Horticulturae; vol. 1085).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Pezizomycotina: Eurotiomycetes

Geiser, D. M., Lobuglio, K. F. & Gueidan, C., Jan 1 2015, The Mycota: A Comprehensive Treatise on Fungi As Experimental Systems for Basic and Applied Research: VII Systematics and Evolution Part B 2nd Edition. Springer Berlin Heidelberg, p. 121-141 21 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

19 Scopus citations

2014

Climate change and plant biosecurity: Implications for policy

Luck, J., Campbell, I. D., Magarey, R., Isard, S., Aurambout, J. P. & Finlay, K., Jan 1 2014, The Handbook of Plant Biosecurity: Principles and Practices for the Identification, Containment and Control of Organisms that Threaten Agriculture and the Environment Globally. Springer Netherlands, p. 655-691 37 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

4 Scopus citations

Ecological genomics of pseudomonas syringae

Baltrus, D. A., Hendry, T. A. & Hockett, K. L., Apr 1 2014, Genomics of Plant-Associated Bacteria. Springer-Verlag Berlin Heidelberg, Vol. 9783642553783. p. 59-77 19 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

9 Scopus citations

Fusarium oxysporum

Kang, S., Demers, J., Jimenez Gasco, M. D. M. & Rep, M., Jun 1 2014, Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens. Springer-Verlag Berlin Heidelberg, p. 99-119 21 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

23 Scopus citations

Soybean seed oil: Nutritional composition, healthy benefits and commercial applications

de Almeida Chuffa, L. G., Vieira, F. R., da Silva, D. A. F. & Franco, D. M., Jan 1 2014, Seed Oil: Biological Properties, Health Benefits and Commercial Applications. Nova Science Publishers, Inc., p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

8 Scopus citations

Virus-resistant crops and trees

Rosa, C. & Falk, B. W., Apr 1 2014, Plant Biotechnology: Experience and Future Prospects. Springer International Publishing, Vol. 9783319068923. p. 155-168 14 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2013

Inoculation and scoring methods for rice sheath blight disease

Jia, Y., Liu, G., Park, D. S. & Yang, Y., 2013, Rice Protocols. Humana Press Inc., p. 257-268 12 p. (Methods in Molecular Biology; vol. 956).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

30 Scopus citations

Molecular strategies to improve rice disease resistance

Helliwell, E. E. & Yang, Y., 2013, Rice Protocols. Humana Press Inc., p. 285-309 25 p. (Methods in Molecular Biology; vol. 956).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

25 Scopus citations

Multiplexed Interactions. Viruses of Endophytic Fungi.

Bao, X. & Roossinck, M. J., 2013, Advances in Virus Research. Academic Press Inc., p. 37-58 22 p. (Advances in Virus Research; vol. 86).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

49 Scopus citations

2012

Atomic force microscopy: A tool for studying biophysical surface properties underpinning fungal interactions with plants and substrates

Adams, E., Emerson, D., Croker, S., Kim, H. S., Modla, S., Kang, S. & Czymmek, K., 2012, Plant Fungal Pathogens: Methods and Protocols. p. 151-164 14 p. (Methods in Molecular Biology; vol. 835).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

3 Scopus citations

Persistent plant viruses: Molecular hitchhikers or epigenetic elements?

Roossinck, M. J., Nov 1 2012, Viruses: Essential Agents of Life. Springer Netherlands, Vol. 9789400748996. p. 177-186 10 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

44 Scopus citations

Viruses, fungi and plants: Cross-kingdom communication and mutualism

Rodriguez, R. J. & Roossinck, M., Oct 1 2012, Biocommunication of Fungi. Springer Netherlands, Vol. 9789400742642. p. 219-227 9 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

8 Scopus citations

2011

Online aerobiology process model

Russo, J. M. & Isard, S. A., Jan 1 2011, GIS Applications in Agriculture: Volume Three: Invasive Species. CRC Press, p. 159-166 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

2008

Application of aerobiology to IPM

Isard, S. A., Mortensen, D. A., Fleischer, S. J. & De Wolf, E. D., Jan 1 2008, Integrated Pest Management: Concepts, Tactics, Strategies and Case Studies. Cambridge University Press, p. 90-106 17 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

6 Scopus citations

A review of molecular phylogenetics in Aspergillus, and prospects for a robust genus-wide phylogeny

Geiser, D. M., Samson, R. A., Varga, J., Rokas, A. & Witiak, S. M., 2008, Aspergillus in the Genomic Era. Wageningen Academic Publishers, p. 17-32 16 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

16 Scopus citations

Jasmonic acid- and salicylic acid-mediated defense signal transduction in rice

Yang, Y., Qi, M., Lee, M. W. & Xiong, L., Jan 1 2008, Advances In Rice Genetics (In 2 Parts). World Scientific Publishing Co., p. 429-431 3 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Mutant Clouds and Bottleneck Events in Plant Virus Evolution

Roossinck, M. J., Jan 1 2008, Origin and Evolution of Viruses, Second Edition. Elsevier, p. 251-258 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

8 Scopus citations

Mycotoxins from Fungal-Infected Sorghum: Claviceps, Fusarium, and the Striga Connection

Porter, J. K., Bacon, C. W., Norred, W. P., Wray, E. M., Kuldau, G. A., Glenn, A. E. & Leslie, J. F., Jan 1 2008, Sorghum and Millets Diseases. wiley, p. 229-235 7 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Symbiosis, mutualism and symbiogenesis

Roossinck, M. J., 2008, Plant Virus Evolution. Springer Berlin Heidelberg, p. 157-164 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

14 Scopus citations

Virus populations, mutation rates and frequencies

Pita, J. S. & Roossinck, M. J., Dec 1 2008, Plant Virus Evolution. Springer Berlin Heidelberg, p. 109-121 13 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

9 Scopus citations

2007

Biocontrol of Root Diseases by Pseudomonas fluorescens CHA0: Current Concepts and Experimental Approaches

Voisard, C., Bull, C. T., Keel, C., Laville, J., Maurhofer, M., Schnider, U., Défago, G. & Haas, D., Dec 21 2007, Molecular Ecology of Rhizosphere Microorganisms: Biotechnology and the Release of GMOs. Wiley-Blackwell, p. 67-89 23 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

162 Citations (SciVal)

Mechanisms of plant virus evolution and identification of genetic bottlenecks: Impact on diseasemanagement

Roossinck, M. J. & Ali, A., Oct 31 2007, Biotechnology and Plant Disease Management. CABI Publishing, p. 109-124 16 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

13 Scopus citations

2006

Defense signaling and pathway interactions involved in rice disease resistance

Zhou, X., Bailey, T. & Yang, Y., Jan 1 2006, Model Plants and Crop Improvement. CRC Press, p. 207-225 19 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

1 Scopus citations

Disease assessment concepts and the advancements made in improving the accuracy and precision of plant disease data

Nutter, F. W., Esker, P. & Coelho Netto, R. A., Dec 1 2006, Plant disease epidemiology: facing challenges of the 21st Century: Under the aegis of an International Plant Disease Epidemiology Workshop held at Landernau, France, 10-15th April, 2005. Springer Netherlands, p. 95-103 9 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

10 Scopus citations

2004

Molecular and genetic basis of plant-fungal pathogen interactions

Kang, S. & Dobinson, K. F., 2004, Applied Mycology and Biotechnology. C ed. Elsevier, p. 59-97 39 p. (Applied Mycology and Biotechnology; vol. 4, no. C).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

2 Scopus citations

Plant Pathology and Environmental Microbiology

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