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Anton Nekrutenko

    Calculated based on number of publications stored in Pure and citations from Scopus
    1998 …2025

    Research activity per year

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    Expertise related to UN Sustainable Development Goals

    In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

    • SDG 3 - Good Health and Well-being

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    View all 16 grants & projects

    • Evaluation of sequencing reads at scale using rdeval

      Formenti, G., Koo, B., Sollitto, M., Balacco, J., Brajuka, N., Burhans, R., Duarte, E., Giani, A. M., McCaffrey, K., Medico, J. A., Myers, E. W., Smeds, P., Nekrutenko, A. & Jarvis, E. D., Sep 1 2025, In: Bioinformatics. 41, 9, btaf416.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • KegAlign: optimizing pairwise alignments with diagonal partitioning

      Gulhan, A. B., Burhans, R., Harris, R., Kandemir, M., Haeussler, M. & Nekrutenko, A., Dec 2025, In: Genome biology. 26, 1, 389.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

      Larivière, D., Abueg, L., Brajuka, N., Gallardo-Alba, C., Grüning, B., Ko, B. J., Ostrovsky, A., Palmada-Flores, M., Pickett, B. D., Rabbani, K., Antunes, A., Balacco, J. R., Chaisson, M. J. P., Cheng, H., Collins, J., Couture, M., Denisova, A., Fedrigo, O., Gallo, G. R. & Giani, A. M. & 21 others, Gooder, G. M. D., Horan, K., Jain, N., Johnson, C., Kim, H., Lee, C., Marques-Bonet, T., O’Toole, B., Rhie, A., Secomandi, S., Sozzoni, M., Tilley, T., Uliano-Silva, M., van den Beek, M., Williams, R. W., Waterhouse, R. M., Phillippy, A. M., Jarvis, E. D., Schatz, M. C., Nekrutenko, A. & Formenti, G., Mar 2024, In: Nature Biotechnology. 42, 3, p. 367-370 4 p.

      Research output: Contribution to journal › Letter › peer-review

      Open Access
      38 Scopus citations

    • The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

      Abueg, L. A. L., Afgan, E., Allart, O., Awan, A. H., Bacon, W. A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C. J., Burke, M. L., Capon, P. K., Čech, M., Chavero-Díez, M., Chilton, J. M., Collins, T. J. & Coppens, F. & 110 others, Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P. F., de Koning, W., Demko, M., DeSanto, A., Begines, J. M. D., Doyle, M. A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M. C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A. N., Goonasekera, N. A., Goué, N., Griffin, T. J., Grüning, B. A., Guerler, A., Gundersen, S., Gustafsson, O. J. R., Hall, C., Harrop, T. W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H. R., Hyde, C. J., Jagtap, P. D., Jakiela, J., Johnson, J. E., Joshi, J., Jossé, M., Jum’ah, K., Kalaš, M., Kamieniecka, K., Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L. S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P. A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T. M., Oba, A. J., Ostrovsky, A., Polunina, P. V., Poterlowicz, K., Price, E. J., Price, G. R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M. T., Savchenko, V., Savchenko, D., Schatz, M. C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S. K., Suderman, K., Syme, A. E., Tangaro, M. A., Tedds, J. A., Tekman, M., Thang, W. C., Thanki, A. S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G. R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P. & Zoabi, R., Jul 5 2024, In: Nucleic acids research. 52, W1, p. W83-W94

      Research output: Contribution to journal › Article › peer-review

      Open Access
      373 Scopus citations

    • Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

      Guerler, A., Baker, D., van den Beek, M., Gruening, B., Bouvier, D., Coraor, N., Shank, S. D., Zehr, J. D., Schatz, M. C. & Nekrutenko, A., Dec 2023, In: BMC bioinformatics. 24, 1, 263.

      Research output: Contribution to journal › Article › peer-review

      Open Access
    View all 102 Research outputs