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Anton Nekrutenko

    Calculated based on number of publications stored in Pure and citations from Scopus
    1998 …2025

    Research activity per year

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    Expertise related to UN Sustainable Development Goals

    In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

    • SDG 3 - Good Health and Well-being

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    • Evaluation of sequencing reads at scale using rdeval

      Formenti, G., Koo, B., Sollitto, M., Balacco, J., Brajuka, N., Burhans, R., Duarte, E., Giani, A. M., McCaffrey, K., Medico, J. A., Myers, E. W., Smeds, P., Nekrutenko, A. & Jarvis, E. D., Sep 1 2025, In: Bioinformatics. 41, 9, btaf416.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

      Larivière, D., Abueg, L., Brajuka, N., Gallardo-Alba, C., Grüning, B., Ko, B. J., Ostrovsky, A., Palmada-Flores, M., Pickett, B. D., Rabbani, K., Antunes, A., Balacco, J. R., Chaisson, M. J. P., Cheng, H., Collins, J., Couture, M., Denisova, A., Fedrigo, O., Gallo, G. R. & Giani, A. M. & 21 others, Gooder, G. M. D., Horan, K., Jain, N., Johnson, C., Kim, H., Lee, C., Marques-Bonet, T., O’Toole, B., Rhie, A., Secomandi, S., Sozzoni, M., Tilley, T., Uliano-Silva, M., van den Beek, M., Williams, R. W., Waterhouse, R. M., Phillippy, A. M., Jarvis, E. D., Schatz, M. C., Nekrutenko, A. & Formenti, G., Mar 2024, In: Nature Biotechnology. 42, 3, p. 367-370 4 p.

      Research output: Contribution to journal › Letter › peer-review

      33 Scopus citations

    • The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

      Abueg, L. A. L., Afgan, E., Allart, O., Awan, A. H., Bacon, W. A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C. J., Burke, M. L., Capon, P. K., Čech, M., Chavero-Díez, M., Chilton, J. M., Collins, T. J. & Coppens, F. & 110 others, Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P. F., de Koning, W., Demko, M., DeSanto, A., Begines, J. M. D., Doyle, M. A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M. C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A. N., Goonasekera, N. A., Goué, N., Griffin, T. J., Grüning, B. A., Guerler, A., Gundersen, S., Gustafsson, O. J. R., Hall, C., Harrop, T. W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H. R., Hyde, C. J., Jagtap, P. D., Jakiela, J., Johnson, J. E., Joshi, J., Jossé, M., Jum’ah, K., Kalaš, M., Kamieniecka, K., Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L. S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P. A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T. M., Oba, A. J., Ostrovsky, A., Polunina, P. V., Poterlowicz, K., Price, E. J., Price, G. R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M. T., Savchenko, V., Savchenko, D., Schatz, M. C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S. K., Suderman, K., Syme, A. E., Tangaro, M. A., Tedds, J. A., Tekman, M., Thang, W. C., Thanki, A. S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G. R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P. & Zoabi, R., Jul 5 2024, In: Nucleic acids research. 52, W1, p. W83-W94

      Research output: Contribution to journal › Article › peer-review

      Open Access
      286 Scopus citations

    • Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

      Guerler, A., Baker, D., van den Beek, M., Gruening, B., Bouvier, D., Coraor, N., Shank, S. D., Zehr, J. D., Schatz, M. C. & Nekrutenko, A., Dec 2023, In: BMC bioinformatics. 24, 1, 263.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

      Bray, S., Chilton, J., Bernt, M., Soranzo, N., van den Beek, M., Batut, B., Rasche, H., Čech, M., Cock, P. J. A., Grüning, B. & Nekrutenko, A., 2023, In: Genome research. 33, 2, p. 261-268 8 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      5 Scopus citations
    View all 101 Research outputs