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Anton Nekrutenko

    1998 …2026

    Research activity per year

    Personal profile

    Expertise related to UN Sustainable Development Goals

    In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

    1. SDG 3 - Good Health and Well-being
      SDG 3 Good Health and Well-being
    2. SDG 14 - Life Below Water
      SDG 14 Life Below Water

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    Collaborations and top research areas from the last five years

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    View all 25 grants & projects

    • MoleRate: comparing molecular relative evolutionary rates to detect convergent evolution

      Selberg, A. G., Clark, N., Nekrutenko, A., Chikina, M. & Kosakovsky Pond, S. L., Mar 1 2026, In: Evolution. 80, 3, p. 542-553 12 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • Evaluation of sequencing reads at scale using rdeval

      Formenti, G., Koo, B., Sollitto, M., Balacco, J., Brajuka, N., Burhans, R., Duarte, E., Giani, A. M., McCaffrey, K., Medico, J. A., Myers, E. W., Smeds, P., Nekrutenko, A. & Jarvis, E. D., Sep 1 2025, In: Bioinformatics. 41, 9, btaf416.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • KegAlign: optimizing pairwise alignments with diagonal partitioning

      Gulhan, A. B., Burhans, R., Harris, R., Kandemir, M., Haeussler, M. & Nekrutenko, A., Dec 2025, In: Genome biology. 26, 1, 389.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1   Link opens in a new tab Scopus citations

    • Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

      Larivière, D., Abueg, L., Brajuka, N., Gallardo-Alba, C., Grüning, B., Ko, B. J., Ostrovsky, A., Palmada-Flores, M., Pickett, B. D., Rabbani, K., Antunes, A., Balacco, J. R., Chaisson, M. J. P., Cheng, H., Collins, J., Couture, M., Denisova, A., Fedrigo, O., Gallo, G. R. & Giani, A. M. & 21 others, Gooder, G. M. D., Horan, K., Jain, N., Johnson, C., Kim, H., Lee, C., Marques-Bonet, T., O’Toole, B., Rhie, A., Secomandi, S., Sozzoni, M., Tilley, T., Uliano-Silva, M., van den Beek, M., Williams, R. W., Waterhouse, R. M., Phillippy, A. M., Jarvis, E. D., Schatz, M. C., Nekrutenko, A. & Formenti, G., Mar 2024, In: Nature Biotechnology. 42, 3, p. 367-370 4 p.

      Research output: Contribution to journal › Letter › peer-review

      Open Access
      50   Link opens in a new tab Scopus citations

    • The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

      Abueg, L. A. L., Afgan, E., Allart, O., Awan, A. H., Bacon, W. A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C. J., Burke, M. L., Capon, P. K., Čech, M., Chavero-Díez, M., Chilton, J. M., Collins, T. J. & Coppens, F. & 110 others, Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P. F., de Koning, W., Demko, M., DeSanto, A., Begines, J. M. D., Doyle, M. A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M. C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A. N., Goonasekera, N. A., Goué, N., Griffin, T. J., Grüning, B. A., Guerler, A., Gundersen, S., Gustafsson, O. J. R., Hall, C., Harrop, T. W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H. R., Hyde, C. J., Jagtap, P. D., Jakiela, J., Johnson, J. E., Joshi, J., Jossé, M., Jum’ah, K., Kalaš, M., Kamieniecka, K., Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L. S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P. A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T. M., Oba, A. J., Ostrovsky, A., Polunina, P. V., Poterlowicz, K., Price, E. J., Price, G. R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M. T., Savchenko, V., Savchenko, D., Schatz, M. C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S. K., Suderman, K., Syme, A. E., Tangaro, M. A., Tedds, J. A., Tekman, M., Thang, W. C., Thanki, A. S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G. R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P. & Zoabi, R., Jul 5 2024, In: Nucleic acids research. 52, W1, p. W83-W94

      Research output: Contribution to journal › Article › peer-review

      Open Access
      636   Link opens in a new tab Scopus citations
    View all 103 Research outputs