Research output per year
Research output per year
- 11 results
Search results
-
2023
Structure-seq of tRNAs and other short RNAs in droplets and in vivo
Meyer, M. O., Choi, S., Keating, C. D., Bevilacqua, P. C. & Yamagami, R., Jan 2023, Enzymes in RNA Science and Biotechnology Part A. Yamagami, R., Kwok, C. K. & Kwok, C. K. (eds.). Academic Press Inc., p. 81-126 46 p. (Methods in Enzymology; vol. 691).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access2 Scopus citations -
2021
Inverse RNA folding workflow to design and test ribozymes that include pseudoknots
Kayedkhordeh, M., Yamagami, R., Bevilacqua, P. C. & Mathews, D. H., 2021, Methods in Molecular Biology. Humana Press Inc., p. 113-143 31 p. (Methods in Molecular Biology; vol. 2167).Research output: Chapter in Book/Report/Conference proceeding › Chapter
1 Scopus citations -
Measuring the activity and structure of functional RNAs inside compartments formed by liquid-liquid phase separation
Poudyal, R. R., Meyer, M. O. & Bevilacqua, P. C., Jan 2021, Liquid-Liquid Phase Coexistence and Membraneless Organelles. Keating, C. D. (ed.). Academic Press Inc., p. 307-327 21 p. (Methods in Enzymology; vol. 646).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access6 Scopus citations -
2019
In Vivo Genome-Wide RNA Structure Probing with Structure-seq
Ritchey, L. E., Su, Z., Assmann, S. M. & Bevilacqua, P. C., 2019, Methods in Molecular Biology. Humana Press Inc., p. 305-341 37 p. (Methods in Molecular Biology; vol. 1933).Research output: Chapter in Book/Report/Conference proceeding › Chapter
9 Scopus citations -
2016
A High-Throughput Biological Calorimetry Core: Steps to Startup, Run, and Maintain a Multiuser Facility
Yennawar, N. H., Fecko, J. A., Showalter, S. A. & Bevilacqua, P. C., 2016, Methods in Enzymology. Academic Press Inc., p. 435-460 26 p. (Methods in Enzymology; vol. 567).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access6 Scopus citations -
2014
Experimental approaches for measuring pKa's in RNA and DNA
Thaplyal, P. & Bevilacqua, P. C., 2014, Methods in Enzymology. C ed. Academic Press Inc., p. 189-219 31 p. (Methods in Enzymology; vol. 549, no. C).Research output: Chapter in Book/Report/Conference proceeding › Chapter
84 Scopus citations -
2013
An integrated picture of HDV ribozyme catalysis
Golden, B. L., Hammes-Schiffer, S., Carey, P. R. & Bevilacqua, P. C., Jan 1 2013, Biophysics of RNA Folding. Springer New York, p. 135-167 33 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
12 Scopus citations -
2012
Analysis of rna folding and ligand binding by conventional and high-throughput calorimetry
Sokoloski, J. E. & Bevilacqua, P. C., 2012, Bacterial Regulatory RNA: Methods and Protocols. Keiler, K. C. (ed.). p. 145-174 30 p. (Methods in Molecular Biology; vol. 905).Research output: Chapter in Book/Report/Conference proceeding › Chapter
10 Scopus citations -
Mechanistic analysis of the Hepatitis Delta Virus (HDV) ribozyme: Methods for RNA preparation, structure mapping, solvent isotope effects, and co-transcriptional cleavage
Chadalavada, D. M., Cerrone-Szakal, A. L., Wilcox, J. L., Siegfried, N. A. & Bevilacqua, P. C., 2012, Ribozymes: Methods and Protocols. Hartig, J. (ed.). p. 21-40 20 p. (Methods in Molecular Biology; vol. 848).Research output: Chapter in Book/Report/Conference proceeding › Chapter
4 Scopus citations -
2009
Chapter 13 Thinking Inside the Box. Designing, Implementing, and Interpreting Thermodynamic Cycles to Dissect Cooperativity in RNA and DNA Folding
Siegfried, N. A. & Bevilacqua, P. C., 2009, Biothermodynamics, Part A. Johnson, M., Holt, J. & Ackers, G. (eds.). A ed. p. 365-393 29 p. (Methods in Enzymology; vol. 455, no. A).Research output: Chapter in Book/Report/Conference proceeding › Chapter
21 Scopus citations -
2008
Structures, kinetics, thermodynamics, and biological functions of RNA hairpins
Bevilacqua, P. C. & Blose, J. M., 2008, Annual Review of Physical Chemistry. Annual Reviews Inc., p. 79-103 25 p. (Annual Review of Physical Chemistry; vol. 59).Research output: Chapter in Book/Report/Conference proceeding › Chapter
103 Scopus citations