Projects per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Dive into the research topics where Shaun A. Mahony is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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CAREER: Predicting transcription factor binding dynamics across cell types and species
Mahony, S. A. (PI)
6/1/21 → 5/31/26
Project: Research project
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Understanding the predeterminants of transcription factor regulatory activity
Mahony, S. A. (PI)
National Institute of General Medical Sciences
1/1/22 → 12/31/24
Project: Research project
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Genome-wide structural organization of proteins within human gene regulatory complexes
Mahony, S. A. (PI) & Pugh, F. B. (CoPI)
National Institute of General Medical Sciences
1/19/18 → 12/31/21
Project: Research project
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A 2D segmentation method for jointly characterizing epigenetic dynamics in multiple cell lines
Mahony, S. A. (PI) & Zhang, Y. (CoPI)
National Institute of General Medical Sciences
8/1/17 → 7/31/21
Project: Research project
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ABI INNOVATION: Characterizing protein-DNA interactions from high-resolution assays
Mahony, S. A. (PI)
6/1/16 → 5/31/20
Project: Research project
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Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles (Genome Biology, (2023), 24, 1, (79), 10.1186/s13059-023-02915-y)
ENCODE Imputation Challenge Participants, Dec 2025, In: Genome biology. 26, 1, 31.Research output: Contribution to journal › Comment/debate › peer-review
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Accurate allocation of multimapped reads enables regulatory element analysis at repeats
Morrissey, A., Shi, J., James, D. Q. & Mahony, S., Jun 2024, In: Genome research. 34, 6, p. 937-951 15 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum
Bonnell, V. A., Zhang, Y., Brown, A. S., Horton, J., Josling, G. A., Chiu, T. P., Rohs, R., Mahony, S., Gordân, R. & Llinás, M., Sep 23 2024, In: Nucleic acids research. 52, 17, p. 10161-10179 19 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
Xiang, G., He, X., Giardine, B. M., Isaac, K. J., Taylor, D. J., McCoy, R. C., Jansen, C., Keller, C. A., Wixom, A. Q., Cockburn, A., Miller, A., Qi, Q., He, Y., Li, Y., Lichtenberg, J., Heuston, E. F., Anderson, S. M., Luan, J., Vermunt, M. W. & Yue, F. & 14 others, , Jul 2024, In: Genome research. 34, 7, p. 1089-1105 17 p.Research output: Contribution to journal › Article › peer-review
Open Access -
SEM: Size-Based Expectation Maximization for Characterizing Nucleosome Positions and Subtypes
Yang, J., Yen, K. & Mahony, S., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 320-323 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution