TY - JOUR
T1 - A glance of the blood stage transcriptome of a Southeast Asian Plasmodium ovale isolate
AU - Brashear, Awtum M.
AU - Roobsoong, Wanlapa
AU - Siddiqui, Faiza A.
AU - Nguitragool, Wang
AU - Sattabongkot, Jetsumon
AU - López-Uribe, Margarita M.
AU - Miao, Jun
AU - Cui, Liwang
N1 - Publisher Copyright:
© 2019 Brashear et al.
PY - 2019
Y1 - 2019
N2 - Plasmodium ovale accounts for a disproportionate number of travel-related malaria cases. This parasite is understudied since there is a reliance on clinical samples. We collected a P. ovale curtisi parasite isolate from a clinical case in western Thailand and performed RNAseq analysis on the blood stage transcriptomes. Using both de novo assembly and alignment- based methods, we detected the transcripts for 6628 out of 7280 annotated genes. For those lacking evidence of expression, the vast majority belonged to the PIR and STP1 gene families. We identified new splicing patterns for over 2500 genes, and mapped at least one untranslated region for over half of all annotated genes. Our analysis also detected a notable presence of anti-sense transcripts for over 10% of P. ovale curtisi genes. This transcriptomic analysis provides new insights into the blood-stage biology of this neglected parasite.
AB - Plasmodium ovale accounts for a disproportionate number of travel-related malaria cases. This parasite is understudied since there is a reliance on clinical samples. We collected a P. ovale curtisi parasite isolate from a clinical case in western Thailand and performed RNAseq analysis on the blood stage transcriptomes. Using both de novo assembly and alignment- based methods, we detected the transcripts for 6628 out of 7280 annotated genes. For those lacking evidence of expression, the vast majority belonged to the PIR and STP1 gene families. We identified new splicing patterns for over 2500 genes, and mapped at least one untranslated region for over half of all annotated genes. Our analysis also detected a notable presence of anti-sense transcripts for over 10% of P. ovale curtisi genes. This transcriptomic analysis provides new insights into the blood-stage biology of this neglected parasite.
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U2 - 10.1371/journal.pntd.0007850
DO - 10.1371/journal.pntd.0007850
M3 - Article
C2 - 31730621
AN - SCOPUS:85075814649
SN - 1935-2727
VL - 13
JO - PLoS neglected tropical diseases
JF - PLoS neglected tropical diseases
IS - 11
M1 - e0007850
ER -