Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)

Hajnalka Kiss; Markus Nett; Nicole Domin; Karin Martin; Julia A. Maresca; Alex Copeland; Alla Lapidus; Susan Lucas; Kerrie W. Berry; Tijana Glavina del Rio; Eileen Dalin; Hope Tice; Sam Pitluck; Paul Richardson; David Bruce; Lynne Goodwin; Cliff Han; John C. Detter; Jeremy Schmutz; Thomas Brettin; Miriam Land; Loren Hauser; Nikos C. Kyrpides; Natalia Ivanova; Markus Göker; Tanja Woyke; Hans Peter Klenk; Donald A. Bryant

doi:10.4056/sigs.2194987

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95^T)

Hajnalka Kiss, Markus Nett, Nicole Domin, Karin Martin, Julia A. Maresca, Alex Copeland, Alla Lapidus, Susan Lucas, Kerrie W. Berry, Tijana Glavina del Rio, Eileen Dalin, Hope Tice, Sam Pitluck, Paul Richardson, David Bruce, Lynne Goodwin, Cliff Han, John C. Detter, Jeremy Schmutz, Thomas BrettinMiriam Land, Loren Hauser, Nikos C. Kyrpides, Natalia Ivanova, Markus Göker, Tanja Woyke, Hans Peter Klenk, Donald A. Bryant

Biochemistry & Molecular Biology

Research output: Contribution to journal › Article › peer-review

46 Scopus citations

Abstract

Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative pre-dation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic enzymes. The genome of H. aurantiacus strain 114-95^T is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

Original language	English (US)
Pages (from-to)	356-370
Number of pages	15
Journal	Standards in Genomic Sciences
Volume	5
Issue number	3
DOIs	https://doi.org/10.4056/sigs.2194987
State	Published - 2011

All Science Journal Classification (ASJC) codes

Genetics

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Kiss, H., Nett, M., Domin, N., Martin, K., Maresca, J. A., Copeland, A., Lapidus, A., Lucas, S., Berry, K. W., del Rio, T. G., Dalin, E., Tice, H., Pitluck, S., Richardson, P., Bruce, D., Goodwin, L., Han, C., Detter, J. C., Schmutz, J., ... Bryant, D. A. (2011). Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95^T). Standards in Genomic Sciences, 5(3), 356-370. https://doi.org/10.4056/sigs.2194987

@article{c5343f4b4fd74f34b4817f839df0d199,

title = "Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)",

abstract = "Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative pre-dation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic enzymes. The genome of H. aurantiacus strain 114-95T is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.",

author = "Hajnalka Kiss and Markus Nett and Nicole Domin and Karin Martin and Maresca, {Julia A.} and Alex Copeland and Alla Lapidus and Susan Lucas and Berry, {Kerrie W.} and {del Rio}, {Tijana Glavina} and Eileen Dalin and Hope Tice and Sam Pitluck and Paul Richardson and David Bruce and Lynne Goodwin and Cliff Han and Detter, {John C.} and Jeremy Schmutz and Thomas Brettin and Miriam Land and Loren Hauser and Kyrpides, {Nikos C.} and Natalia Ivanova and Markus G{\"o}ker and Tanja Woyke and Klenk, {Hans Peter} and Bryant, {Donald A.}",

note = "Funding Information: The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 and was also supported by NSF grant MCB-0523100 to D.A.B. M.N. gratefully",

year = "2011",

doi = "10.4056/sigs.2194987",

language = "English (US)",

volume = "5",

pages = "356--370",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "BioMed Central Ltd.",

number = "3",

}

Kiss, H, Nett, M, Domin, N, Martin, K, Maresca, JA, Copeland, A, Lapidus, A, Lucas, S, Berry, KW, del Rio, TG, Dalin, E, Tice, H, Pitluck, S, Richardson, P, Bruce, D, Goodwin, L, Han, C, Detter, JC, Schmutz, J, Brettin, T, Land, M, Hauser, L, Kyrpides, NC, Ivanova, N, Göker, M, Woyke, T, Klenk, HP & Bryant, DA 2011, 'Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95^T)', Standards in Genomic Sciences, vol. 5, no. 3, pp. 356-370. https://doi.org/10.4056/sigs.2194987

TY - JOUR

T1 - Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95T)

AU - Kiss, Hajnalka

AU - Nett, Markus

AU - Domin, Nicole

AU - Martin, Karin

AU - Maresca, Julia A.

AU - Copeland, Alex

AU - Lapidus, Alla

AU - Lucas, Susan

AU - Berry, Kerrie W.

AU - del Rio, Tijana Glavina

AU - Dalin, Eileen

AU - Tice, Hope

AU - Pitluck, Sam

AU - Richardson, Paul

AU - Bruce, David

AU - Goodwin, Lynne

AU - Han, Cliff

AU - Detter, John C.

AU - Schmutz, Jeremy

AU - Brettin, Thomas

AU - Land, Miriam

AU - Hauser, Loren

AU - Kyrpides, Nikos C.

AU - Ivanova, Natalia

AU - Göker, Markus

AU - Woyke, Tanja

AU - Klenk, Hans Peter

AU - Bryant, Donald A.

N1 - Funding Information: The work conducted by the U.S. Department of Energy Joint Genome Institute was supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 and was also supported by NSF grant MCB-0523100 to D.A.B. M.N. gratefully

PY - 2011

Y1 - 2011

N2 - Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative pre-dation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic enzymes. The genome of H. aurantiacus strain 114-95T is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

AB - Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative pre-dation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic enzymes. The genome of H. aurantiacus strain 114-95T is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

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DO - 10.4056/sigs.2194987

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VL - 5

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EP - 370

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 3

ER -

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95^T)

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