TY - JOUR
T1 - Correction to
T2 - Genetic continuity and change among the Indigenous peoples of California (Nature, (2023), 624, 7990, (122-129), 10.1038/s41586-023-06771-5)
AU - Nakatsuka, Nathan
AU - Holguin, Brian
AU - Sedig, Jakob
AU - Langenwalter, Paul E.
AU - Carpenter, John
AU - Culleton, Brendan J.
AU - García-Moreno, Cristina
AU - Harper, Thomas K.
AU - Martin, Debra
AU - Martínez-Ramírez, Júpiter
AU - Porcayo-Michelini, Antonio
AU - Tiesler, Vera
AU - Villapando-Canchola, M. Elisa
AU - Valdes Herrera, Alejandro
AU - Callan, Kim
AU - Curtis, Elizabeth
AU - Kearns, Aisling
AU - Iliev, Lora
AU - Lawson, Ann Marie
AU - Mah, Matthew
AU - Mallick, Swapan
AU - Micco, Adam
AU - Michel, Megan
AU - Workman, J. Noah
AU - Oppenheimer, Jonas
AU - Qiu, Lijun
AU - Zalzala, Fatma
AU - Rohland, Nadin
AU - Punzo Diaz, Jose Luis
AU - Johnson, John R.
AU - Reich, David
N1 - Publisher Copyright:
© The Author(s), under exclusive licence to Springer Nature Limited 2024.
PY - 2024/8/8
Y1 - 2024/8/8
N2 - Correction to: Naturehttps://doi.org/10.1038/s41586-023-06771-5 Published online 22 November 2023 After publication of our manuscript, we were alerted by readers that mitochondrial haplogroup C5b, which we had inferred for several individuals, has not previously been found in Indigenous peoples of the Americas, which suggested that we should re-examine our data to confirm this haplogroup inference. We have now re-called all the mitochondrial haplogroups newly published in our paper and found that indeed the C5b calls were erroneous. We found that the mitochondrial haplogroups labeled as C5b in the original manuscript were re-inferred to be C1b or C1c when we analyzed the data using the most up-to-date version of the HaploGrep software (HaploGrep3 (ref. 1)) and an up-to-date mitochondrial phylogeny (Phylotree version 17 (ref. 2)). A new version of Supplementary Data 1 has been uploaded with newly called mitochondrial haplogroups using both HaploGrep2 and HaploGrep3 with additional manual inspection of the C haplogroups. In the manuscript text, we now correct two sentences in the main text. In the second paragraph of the section “Overview of genetic data”, originally reading “…carried A2 haplotypes, with B2, C1b, C1c, C5b, D1 and D4h3a all represented…”, the text now reads “…carried A2 haplotypes, with B2, C1b, C1c, D1 and D4h3a all represented…”. In the next sentence, originally reading “…had A2 haplotypes, with B2, C1b, C1c, C5b and D4h3a also represented…”, the text now reads “…had A2 haplotypes, with B2, C1b, C1c and D4h3a also represented…”. We also made the following change to the Methods section of the main text: In the “Analyses of uniparental haplogroups” section, the sentence originally reading “…then inferred the haplogroup using HaploGrep2 with Phylotree (v.17)…”, now reads “…then inferred the haplogroup using both HaploGrep2 and HaploGrep 3 (ref. 1) with Phylotree (v.17)2. For HaploGrep3 inferences at all C haplogroups, we performed manual curation, counting support for each derived mutation for the haplogroup call along edges of the path from the root to the end as well as support for potential children and siblings of the call”. These changes have been made to the HTML and PDF versions of the article.
AB - Correction to: Naturehttps://doi.org/10.1038/s41586-023-06771-5 Published online 22 November 2023 After publication of our manuscript, we were alerted by readers that mitochondrial haplogroup C5b, which we had inferred for several individuals, has not previously been found in Indigenous peoples of the Americas, which suggested that we should re-examine our data to confirm this haplogroup inference. We have now re-called all the mitochondrial haplogroups newly published in our paper and found that indeed the C5b calls were erroneous. We found that the mitochondrial haplogroups labeled as C5b in the original manuscript were re-inferred to be C1b or C1c when we analyzed the data using the most up-to-date version of the HaploGrep software (HaploGrep3 (ref. 1)) and an up-to-date mitochondrial phylogeny (Phylotree version 17 (ref. 2)). A new version of Supplementary Data 1 has been uploaded with newly called mitochondrial haplogroups using both HaploGrep2 and HaploGrep3 with additional manual inspection of the C haplogroups. In the manuscript text, we now correct two sentences in the main text. In the second paragraph of the section “Overview of genetic data”, originally reading “…carried A2 haplotypes, with B2, C1b, C1c, C5b, D1 and D4h3a all represented…”, the text now reads “…carried A2 haplotypes, with B2, C1b, C1c, D1 and D4h3a all represented…”. In the next sentence, originally reading “…had A2 haplotypes, with B2, C1b, C1c, C5b and D4h3a also represented…”, the text now reads “…had A2 haplotypes, with B2, C1b, C1c and D4h3a also represented…”. We also made the following change to the Methods section of the main text: In the “Analyses of uniparental haplogroups” section, the sentence originally reading “…then inferred the haplogroup using HaploGrep2 with Phylotree (v.17)…”, now reads “…then inferred the haplogroup using both HaploGrep2 and HaploGrep 3 (ref. 1) with Phylotree (v.17)2. For HaploGrep3 inferences at all C haplogroups, we performed manual curation, counting support for each derived mutation for the haplogroup call along edges of the path from the root to the end as well as support for potential children and siblings of the call”. These changes have been made to the HTML and PDF versions of the article.
UR - https://www.scopus.com/pages/publications/85198532012
UR - https://www.scopus.com/inward/citedby.url?scp=85198532012&partnerID=8YFLogxK
U2 - 10.1038/s41586-024-07790-6
DO - 10.1038/s41586-024-07790-6
M3 - Comment/debate
C2 - 39009784
AN - SCOPUS:85198532012
SN - 0028-0836
VL - 632
SP - E1
JO - Nature
JF - Nature
IS - 8024
ER -