Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine; Cathy Riemer; Ross C. Hardison; Richard Burhans; Laura Elnitski; Prachi Shah; Yi Zhang; Daniel Blankenberg; Istvan Albert; James Taylor; Webb Miller; W. James Kent; Anton Nekrutenko

doi:10.1101/gr.4086505

Galaxy: A platform for interactive large-scale genome analysis

Belinda Giardine
, Cathy Riemer
, Ross C. Hardison
, Richard Burhans
, Laura Elnitski
, Prachi Shah
, Yi Zhang
, Daniel Blankenberg
, Istvan Albert
, James Taylor
, Webb Miller
, W. James Kent
, Anton Nekrutenko

Research output: Contribution to journal › Article › peer-review

1652 Scopus citations

Abstract

Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search remote resources, combine data from independent queries, and visualize the results. The heart of Galaxy is a flexible history system that stores the queries from each user; performs operations such as intersections, unions, and subtractions; and links to other computational tools. Galaxy can be accessed at http://g2.bx.psu.edu.

Original language	English (US)
Pages (from-to)	1451-1455
Number of pages	5
Journal	Genome research
Volume	15
Issue number	10
DOIs	https://doi.org/10.1101/gr.4086505
State	Published - Oct 2005

All Science Journal Classification (ASJC) codes

Genetics
Genetics(clinical)

Access to Document

10.1101/gr.4086505

Cite this

@article{e08abcebf121436eacf12fd11a31ce44,

title = "Galaxy: A platform for interactive large-scale genome analysis",

abstract = "Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search remote resources, combine data from independent queries, and visualize the results. The heart of Galaxy is a flexible history system that stores the queries from each user; performs operations such as intersections, unions, and subtractions; and links to other computational tools. Galaxy can be accessed at http://g2.bx.psu.edu.",

author = "Belinda Giardine and Cathy Riemer and Hardison, \{Ross C.\} and Richard Burhans and Laura Elnitski and Prachi Shah and Yi Zhang and Daniel Blankenberg and Istvan Albert and James Taylor and Webb Miller and Kent, \{W. James\} and Anton Nekrutenko",

year = "2005",

month = oct,

doi = "10.1101/gr.4086505",

language = "English (US)",

volume = "15",

pages = "1451--1455",

journal = "Genome research",

issn = "1088-9051",

publisher = "Cold Spring Harbor Laboratory Press",

number = "10",

}

TY - JOUR

T1 - Galaxy

T2 - A platform for interactive large-scale genome analysis

AU - Giardine, Belinda

AU - Riemer, Cathy

AU - Hardison, Ross C.

AU - Burhans, Richard

AU - Elnitski, Laura

AU - Shah, Prachi

AU - Zhang, Yi

AU - Blankenberg, Daniel

AU - Albert, Istvan

AU - Taylor, James

AU - Miller, Webb

AU - Kent, W. James

AU - Nekrutenko, Anton

PY - 2005/10

Y1 - 2005/10

N2 - Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search remote resources, combine data from independent queries, and visualize the results. The heart of Galaxy is a flexible history system that stores the queries from each user; performs operations such as intersections, unions, and subtractions; and links to other computational tools. Galaxy can be accessed at http://g2.bx.psu.edu.

AB - Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search remote resources, combine data from independent queries, and visualize the results. The heart of Galaxy is a flexible history system that stores the queries from each user; performs operations such as intersections, unions, and subtractions; and links to other computational tools. Galaxy can be accessed at http://g2.bx.psu.edu.

UR - https://www.scopus.com/pages/publications/25844449770

UR - https://www.scopus.com/pages/publications/25844449770#tab=citedBy

U2 - 10.1101/gr.4086505

DO - 10.1101/gr.4086505

M3 - Article

C2 - 16169926

AN - SCOPUS:25844449770

SN - 1088-9051

VL - 15

SP - 1451

EP - 1455

JO - Genome research

JF - Genome research

IS - 10

ER -

Galaxy: A platform for interactive large-scale genome analysis

Abstract

All Science Journal Classification (ASJC) codes

Access to Document

Other files and links

Fingerprint

Cite this