Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica

Jacqueline Goordial; Isabelle Raymond-Bouchard; Robert Riley; Jennifer Ronholm; Nicole Shapiro; Tanja Woyke; Kurt M. LaButti; Hope Tice; Mojgan Amirebrahimi; Igor V. Grigoriev; Charles Greer; Corien Bakermans; Lyle Whyte

doi:10.1128/genomeA.00069-16

Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica

Jacqueline Goordial, Isabelle Raymond-Bouchard, Robert Riley, Jennifer Ronholm, Nicole Shapiro, Tanja Woyke, Kurt M. LaButti, Hope Tice, Mojgan Amirebrahimi, Igor V. Grigoriev, Charles Greer, Corien Bakermans, Lyle Whyte

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20 Scopus citations

Abstract

Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date.

Original language	English (US)
Article number	e00069-16
Journal	Genome Announcements
Volume	4
Issue number	2
DOIs	https://doi.org/10.1128/genomeA.00069-16
State	Published - 2016

All Science Journal Classification (ASJC) codes

Molecular Biology
Genetics

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Goordial, J., Raymond-Bouchard, I., Riley, R., Ronholm, J., Shapiro, N., Woyke, T., LaButti, K. M., Tice, H., Amirebrahimi, M., Grigoriev, I. V., Greer, C., Bakermans, C., & Whyte, L. (2016). Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica. Genome Announcements, 4(2), Article e00069-16. https://doi.org/10.1128/genomeA.00069-16

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title = "Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica",

abstract = "Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date.",

author = "Jacqueline Goordial and Isabelle Raymond-Bouchard and Robert Riley and Jennifer Ronholm and Nicole Shapiro and Tanja Woyke and LaButti, {Kurt M.} and Hope Tice and Mojgan Amirebrahimi and Grigoriev, {Igor V.} and Charles Greer and Corien Bakermans and Lyle Whyte",

note = "Funding Information: This work was supported by NASA's ASTEP program and received field support via NSF/OPP (project B-302-M). Support was provided by the Natural Sciences and Engineering Research Council (NSERC) Discovery Grant Program, NSERC Northern Supplements Program, and NSERC CREATE Canadian Astrobiology Training Program (CATP). The work by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. Publisher Copyright: {\textcopyright} 2016 Goordial et al.",

year = "2016",

doi = "10.1128/genomeA.00069-16",

language = "English (US)",

volume = "4",

journal = "Genome Announcements",

issn = "2169-8287",

publisher = "American Society for Microbiology",

number = "2",

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Goordial, J, Raymond-Bouchard, I, Riley, R, Ronholm, J, Shapiro, N, Woyke, T, LaButti, KM, Tice, H, Amirebrahimi, M, Grigoriev, IV, Greer, C, Bakermans, C & Whyte, L 2016, 'Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica', Genome Announcements, vol. 4, no. 2, e00069-16. https://doi.org/10.1128/genomeA.00069-16

Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica. / Goordial, Jacqueline; Raymond-Bouchard, Isabelle; Riley, Robert et al.
In: Genome Announcements, Vol. 4, No. 2, e00069-16, 2016.

Research output: Contribution to journal › Article › peer-review

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T1 - Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica

AU - Goordial, Jacqueline

AU - Raymond-Bouchard, Isabelle

AU - Riley, Robert

AU - Ronholm, Jennifer

AU - Shapiro, Nicole

AU - Woyke, Tanja

AU - LaButti, Kurt M.

AU - Tice, Hope

AU - Amirebrahimi, Mojgan

AU - Grigoriev, Igor V.

AU - Greer, Charles

AU - Bakermans, Corien

AU - Whyte, Lyle

N1 - Funding Information: This work was supported by NASA's ASTEP program and received field support via NSF/OPP (project B-302-M). Support was provided by the Natural Sciences and Engineering Research Council (NSERC) Discovery Grant Program, NSERC Northern Supplements Program, and NSERC CREATE Canadian Astrobiology Training Program (CATP). The work by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. Publisher Copyright: © 2016 Goordial et al.

PY - 2016

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AB - Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date.

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Improved high-quality draft genome sequence of the eurypsychrophile Rhodotorula sp. JG1b, isolated from permafrost in the hyperarid upper-elevation McMurdo Dry Valleys, Antarctica

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