TY - JOUR
T1 - Inferring Plant Acclimation and Improving Model Generalizability With Differentiable Physics-Informed Machine Learning of Photosynthesis
AU - Aboelyazeed, Doaa
AU - Xu, Chonggang
AU - Gu, Lianhong
AU - Luo, Xiangzhong
AU - Liu, Jiangtao
AU - Lawson, Kathryn
AU - Shen, Chaopeng
N1 - Publisher Copyright:
© 2025 The Author(s).
PY - 2025/7
Y1 - 2025/7
N2 - Net photosynthesis (AN) is a key component of the global carbon cycle influencing climate feedback over decadal scales. Although plant acclimation to environmental changes can modify AN, traditional vegetation models in Earth system models (ESMs) often rely on plant functional type (PFT)-specific parameterizations or simplified acclimation assumptions limiting generalizability across time, space, and PFTs. In this study, we developed a differentiable photosynthesis model to learn the environmental dependencies ofVc,max25 (maximum carboxylation rate at 25°C, representing photosynthetic capacity), as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of Vc,max25, learning the environment dependencies of key photosynthetic parameters improved model spatiotemporal generalizability. Applying environmental acclimation to Vc,max25 led to substantial variations in global mean AN indicating the need to address acclimation in ESMs. The model effectively captured multivariate observations (Vc,max25, AN, and stomatal conductance (gs)) simultaneously with multivariate constraints, improving generalization across space and PFTs. It also learned sensible acclimation relationships of Vc,max25 to different environmental conditions. The model explained more than 54%, 57%, and 62% of the variance of AN, gs, and Vc,max25, respectively, presenting a first global-scale spatial test benchmark of AN and gs. These results highlight the potential for differentiable modeling to enhance process-based modules in ESMs and effectively leverage information from large, multivariate data sets.
AB - Net photosynthesis (AN) is a key component of the global carbon cycle influencing climate feedback over decadal scales. Although plant acclimation to environmental changes can modify AN, traditional vegetation models in Earth system models (ESMs) often rely on plant functional type (PFT)-specific parameterizations or simplified acclimation assumptions limiting generalizability across time, space, and PFTs. In this study, we developed a differentiable photosynthesis model to learn the environmental dependencies ofVc,max25 (maximum carboxylation rate at 25°C, representing photosynthetic capacity), as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of Vc,max25, learning the environment dependencies of key photosynthetic parameters improved model spatiotemporal generalizability. Applying environmental acclimation to Vc,max25 led to substantial variations in global mean AN indicating the need to address acclimation in ESMs. The model effectively captured multivariate observations (Vc,max25, AN, and stomatal conductance (gs)) simultaneously with multivariate constraints, improving generalization across space and PFTs. It also learned sensible acclimation relationships of Vc,max25 to different environmental conditions. The model explained more than 54%, 57%, and 62% of the variance of AN, gs, and Vc,max25, respectively, presenting a first global-scale spatial test benchmark of AN and gs. These results highlight the potential for differentiable modeling to enhance process-based modules in ESMs and effectively leverage information from large, multivariate data sets.
UR - https://www.scopus.com/pages/publications/105009249322
UR - https://www.scopus.com/inward/citedby.url?scp=105009249322&partnerID=8YFLogxK
U2 - 10.1029/2024JG008552
DO - 10.1029/2024JG008552
M3 - Article
AN - SCOPUS:105009249322
SN - 2169-8953
VL - 130
JO - Journal of Geophysical Research: Biogeosciences
JF - Journal of Geophysical Research: Biogeosciences
IS - 7
M1 - e2024JG008552
ER -