TY - JOUR
T1 - More compact protein globules exhibit slower folding rates
AU - Galzitskaya, Oxana V.
AU - Reifsnyder, Danielle C.
AU - Bogatyreva, Natalya S.
AU - Ivankov, Dmitry N.
AU - Garbuzynskiy, Sergiy O.
PY - 2008/2/1
Y1 - 2008/2/1
N2 - We have demonstrated that, among proteins of the same size, α/β proteins have on the average a greater number of contacts per residue due to their more compact (more "spherical") structure, rather than due to tighter packing. We have examined the relationship between the average number of contacts per residue and folding rates in globular proteins according to general protein structural class (all-α, all-β, α/β, α+β). Our analysis demonstrates that α/β proteins have both the greatest number of contacts and the slowest folding rates in comparison to proteins from the other structural classes. Because α/β proteins are also known to be the oldest proteins, it can be suggested that proteins have evolved to pack more quickly and into looser structures.
AB - We have demonstrated that, among proteins of the same size, α/β proteins have on the average a greater number of contacts per residue due to their more compact (more "spherical") structure, rather than due to tighter packing. We have examined the relationship between the average number of contacts per residue and folding rates in globular proteins according to general protein structural class (all-α, all-β, α/β, α+β). Our analysis demonstrates that α/β proteins have both the greatest number of contacts and the slowest folding rates in comparison to proteins from the other structural classes. Because α/β proteins are also known to be the oldest proteins, it can be suggested that proteins have evolved to pack more quickly and into looser structures.
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U2 - 10.1002/prot.21619
DO - 10.1002/prot.21619
M3 - Article
C2 - 17876831
AN - SCOPUS:37849043628
SN - 0887-3585
VL - 70
SP - 329
EP - 332
JO - Proteins: Structure, Function and Genetics
JF - Proteins: Structure, Function and Genetics
IS - 2
ER -