Mosaicflye: resolving long mosaic repeats using long reads

Anton Bankevich; Pavel Pevzner

doi:10.1007/978-3-030-45257-5_16

Mosaicflye: resolving long mosaic repeats using long reads

Anton Bankevich, Pavel Pevzner

Computer Science and Engineering

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Abstract

Although long-read sequencing technologies opened a new era in genome assembly, the problem of resolving unbridged repeats (i.e., repeats that are not spanned by any reads) such as long segmental duplications in the human genome remains largely unsolved, making it a major obstacle towards achieving the goal of complete genome assemblies.

Original language	English (US)
Title of host publication	Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings
Editors	Russell Schwartz
Publisher	Springer
Pages	226-228
Number of pages	3
ISBN (Print)	9783030452568
DOIs	https://doi.org/10.1007/978-3-030-45257-5_16
State	Published - 2020
Event	24th Annual Conference on Research in Computational Molecular Biology, RECOMB 2020 - Padua, Italy Duration: May 10 2020 → May 13 2020

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	12074 LNBI
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	24th Annual Conference on Research in Computational Molecular Biology, RECOMB 2020
Country/Territory	Italy
City	Padua
Period	5/10/20 → 5/13/20

All Science Journal Classification (ASJC) codes

Theoretical Computer Science
Computer Science(all)

Access to Document

10.1007/978-3-030-45257-5_16

Cite this

Bankevich, A., & Pevzner, P. (2020). Mosaicflye: resolving long mosaic repeats using long reads. In R. Schwartz (Ed.), Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings (pp. 226-228). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12074 LNBI). Springer. https://doi.org/10.1007/978-3-030-45257-5_16

Bankevich, Anton ; Pevzner, Pavel. / Mosaicflye : resolving long mosaic repeats using long reads. Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. editor / Russell Schwartz. Springer, 2020. pp. 226-228 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "Mosaicflye: resolving long mosaic repeats using long reads",

abstract = "Although long-read sequencing technologies opened a new era in genome assembly, the problem of resolving unbridged repeats (i.e., repeats that are not spanned by any reads) such as long segmental duplications in the human genome remains largely unsolved, making it a major obstacle towards achieving the goal of complete genome assemblies.",

author = "Anton Bankevich and Pavel Pevzner",

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doi = "10.1007/978-3-030-45257-5_16",

language = "English (US)",

isbn = "9783030452568",

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Bankevich, A & Pevzner, P 2020, Mosaicflye: resolving long mosaic repeats using long reads. in R Schwartz (ed.), Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 12074 LNBI, Springer, pp. 226-228, 24th Annual Conference on Research in Computational Molecular Biology, RECOMB 2020, Padua, Italy, 5/10/20. https://doi.org/10.1007/978-3-030-45257-5_16

Mosaicflye: resolving long mosaic repeats using long reads. / Bankevich, Anton; Pevzner, Pavel.
Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. ed. / Russell Schwartz. Springer, 2020. p. 226-228 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 12074 LNBI).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

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AU - Bankevich, Anton

AU - Pevzner, Pavel

PY - 2020

Y1 - 2020

N2 - Although long-read sequencing technologies opened a new era in genome assembly, the problem of resolving unbridged repeats (i.e., repeats that are not spanned by any reads) such as long segmental duplications in the human genome remains largely unsolved, making it a major obstacle towards achieving the goal of complete genome assemblies.

AB - Although long-read sequencing technologies opened a new era in genome assembly, the problem of resolving unbridged repeats (i.e., repeats that are not spanned by any reads) such as long segmental duplications in the human genome remains largely unsolved, making it a major obstacle towards achieving the goal of complete genome assemblies.

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T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

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BT - Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings

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Bankevich A, Pevzner P. Mosaicflye: resolving long mosaic repeats using long reads. In Schwartz R, editor, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Springer. 2020. p. 226-228. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-030-45257-5_16

Mosaicflye: resolving long mosaic repeats using long reads

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All Science Journal Classification (ASJC) codes

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