TY - JOUR
T1 - MultiPipMaker
T2 - A comparative alignment server for multiple DNA sequences
AU - Elnitski, Laura
AU - Burhans, Richard
AU - Riemer, Cathy
AU - Hardison, Ross
AU - Miller, Webb
PY - 2010/6
Y1 - 2010/6
N2 - The MultiPipMaker World Wide Web server (http://www.bx.psu.edu) provides a tool for aligning multiple DNA sequences and visualizing regions of conservation among them. This unit describes its use and gives an explanation of the resulting output files and supporting tools. Features provided by the server include alignment of up to 20 very long genomic sequences, output choices of a true, nucleotide-level multiple alignment and/or stacked, pairwise percent identity plots, and support for user-specified annotations of genomic features and arbitrary regions, with clickable links to additional information. Input sequences other than the reference can be fragmented, unordered, and unoriented.
AB - The MultiPipMaker World Wide Web server (http://www.bx.psu.edu) provides a tool for aligning multiple DNA sequences and visualizing regions of conservation among them. This unit describes its use and gives an explanation of the resulting output files and supporting tools. Features provided by the server include alignment of up to 20 very long genomic sequences, output choices of a true, nucleotide-level multiple alignment and/or stacked, pairwise percent identity plots, and support for user-specified annotations of genomic features and arbitrary regions, with clickable links to additional information. Input sequences other than the reference can be fragmented, unordered, and unoriented.
UR - http://www.scopus.com/inward/record.url?scp=77953848343&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=77953848343&partnerID=8YFLogxK
U2 - 10.1002/0471250953.bi1004s9
DO - 10.1002/0471250953.bi1004s9
M3 - Review article
C2 - 20521245
AN - SCOPUS:77953848343
SN - 1934-3396
SP - 10.4.1-10.4.14
JO - Current Protocols in Bioinformatics
JF - Current Protocols in Bioinformatics
IS - SUPPL. 30
ER -