TY - JOUR
T1 - MultiPipMaker
T2 - comparative alignment server for multiple DNA sequences.
AU - Elnitski, Laura
AU - Riemer, Cathy
AU - Burhans, Richard
AU - Hardison, Ross
AU - Miller, Webb
PY - 2005/4
Y1 - 2005/4
N2 - The MultiPipMaker World Wide Web server (http://www.bx.psu.edu) provides a useful tool for aligning multiple sequences and visualizing regions of conservation between them. This unit describes the use of the MultiPipMaker server and gives an explanation of the resulting output files and supporting tools. Features provided by the server include alignment of up to 20 very long genomic sequences, output choices of a true, nucleotide-level multiple alignment or stacked, pairwise percent identity plots, and user-specified annotations for genomic features and elements of choice, with clickable links to additional information. Alignments can include unordered, unoriented secondary sequences.
AB - The MultiPipMaker World Wide Web server (http://www.bx.psu.edu) provides a useful tool for aligning multiple sequences and visualizing regions of conservation between them. This unit describes the use of the MultiPipMaker server and gives an explanation of the resulting output files and supporting tools. Features provided by the server include alignment of up to 20 very long genomic sequences, output choices of a true, nucleotide-level multiple alignment or stacked, pairwise percent identity plots, and user-specified annotations for genomic features and elements of choice, with clickable links to additional information. Alignments can include unordered, unoriented secondary sequences.
UR - https://www.scopus.com/pages/publications/43349090080
UR - https://www.scopus.com/pages/publications/43349090080#tab=citedBy
M3 - Article
C2 - 18428743
AN - SCOPUS:43349090080
SN - 1934-3396
VL - Chapter 10
SP - Unit10.4
JO - Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]
JF - Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]
ER -