Abstract
Evaluation of a tissue biopsy is often required for the diagnosis and prognostic staging of a disease. Recent efforts have sought to accurately quantitate the distribution of tissue features and morphology in digitized images of histological tissue sections, Whole Slide Images (WSI). Generative modeling techniques present a unique opportunity to produce training data that can both augment these models and translate histologic data across different intra-and-inter-institutional processing procedures, provide cost-effective ways to perform computational chemical stains (synthetic stains) on tissue, and facilitate the creation of diagnostic aid algorithms. A critical evaluation and understanding of these technologies is vital for their incorporation into a clinical workflow. We illustrate several potential use cases of these techniques for the calculation of nuclear to cytoplasm ratio, synthetic SOX10 immunohistochemistry (IHC, sIHC) staining to delineate cell lineage, and the conversion of hematoxylin and eosin (H&E) stain to trichome stain for the staging of liver fibrosis.
| Original language | English (US) |
|---|---|
| Title of host publication | BIOINFORMATICS 2020 - 11th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 13th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2020 |
| Editors | Elisabetta De Maria, Ana Fred, Hugo Gamboa |
| Publisher | SciTePress |
| Pages | 302-311 |
| Number of pages | 10 |
| ISBN (Electronic) | 9789897583988 |
| State | Published - 2020 |
| Event | 11th International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2020 - Part of 13th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2020 - Valletta, Malta Duration: Feb 24 2020 → Feb 26 2020 |
Publication series
| Name | BIOINFORMATICS 2020 - 11th International Conference on Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 13th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2020 |
|---|
Conference
| Conference | 11th International Conference on Bioinformatics Models, Methods and Algorithms, BIOINFORMATICS 2020 - Part of 13th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2020 |
|---|---|
| Country/Territory | Malta |
| City | Valletta |
| Period | 2/24/20 → 2/26/20 |
UN SDGs
This output contributes to the following UN Sustainable Development Goals (SDGs)
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SDG 3 Good Health and Well-being
All Science Journal Classification (ASJC) codes
- Biomedical Engineering
- Electrical and Electronic Engineering
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