Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Delphine Larivière; Linelle Abueg; Nadolina Brajuka; Cristóbal Gallardo-Alba; Bjorn Grüning; Byung June Ko; Alex Ostrovsky; Marc Palmada-Flores; Brandon D. Pickett; Keon Rabbani; Agostinho Antunes; Jennifer R. Balacco; Mark J.P. Chaisson; Haoyu Cheng; Joanna Collins; Melanie Couture; Alexandra Denisova; Olivier Fedrigo; Guido Roberto Gallo; Alice Maria Giani; Grenville Mac Donald Gooder; Kathleen Horan; Nivesh Jain; Cassidy Johnson; Heebal Kim; Chul Lee; Tomas Marques-Bonet; Brian O’Toole; Arang Rhie; Simona Secomandi; Marcella Sozzoni; Tatiana Tilley; Marcela Uliano-Silva; Marius van den Beek; Robert W. Williams; Robert M. Waterhouse; Adam M. Phillippy; Erich D. Jarvis; Michael C. Schatz; Anton Nekrutenko; Giulio Formenti

doi:10.1038/s41587-023-02100-3

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Delphine Larivière, Linelle Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba, Bjorn Grüning, Byung June Ko, Alex Ostrovsky, Marc Palmada-Flores, Brandon D. Pickett, Keon Rabbani, Agostinho Antunes, Jennifer R. Balacco, Mark J.P. Chaisson, Haoyu Cheng, Joanna Collins, Melanie Couture, Alexandra Denisova, Olivier Fedrigo, Guido Roberto Gallo, Alice Maria GianiGrenville Mac Donald Gooder, Kathleen Horan, Nivesh Jain, Cassidy Johnson, Heebal Kim, Chul Lee, Tomas Marques-Bonet, Brian O’Toole, Arang Rhie, Simona Secomandi, Marcella Sozzoni, Tatiana Tilley, Marcela Uliano-Silva, Marius van den Beek, Robert W. Williams, Robert M. Waterhouse, Adam M. Phillippy, Erich D. Jarvis, Michael C. Schatz, Anton Nekrutenko, Giulio Formenti

Research output: Contribution to journal › Letter › peer-review

7 Scopus citations

Original language	English (US)
Pages (from-to)	367-370
Number of pages	4
Journal	Nature Biotechnology
Volume	42
Issue number	3
DOIs	https://doi.org/10.1038/s41587-023-02100-3
State	Published - Mar 2024

All Science Journal Classification (ASJC) codes

Biotechnology
Bioengineering
Applied Microbiology and Biotechnology
Molecular Medicine
Biomedical Engineering

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10.1038/s41587-023-02100-3

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Larivière, D., Abueg, L., Brajuka, N., Gallardo-Alba, C., Grüning, B., Ko, B. J., Ostrovsky, A., Palmada-Flores, M., Pickett, B. D., Rabbani, K., Antunes, A., Balacco, J. R., Chaisson, M. J. P., Cheng, H., Collins, J., Couture, M., Denisova, A., Fedrigo, O., Gallo, G. R., ... Formenti, G. (2024). Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy. Nature Biotechnology, 42(3), 367-370. https://doi.org/10.1038/s41587-023-02100-3

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title = "Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy",

author = "Delphine Larivi{\`e}re and Linelle Abueg and Nadolina Brajuka and Crist{\'o}bal Gallardo-Alba and Bjorn Gr{\"u}ning and Ko, {Byung June} and Alex Ostrovsky and Marc Palmada-Flores and Pickett, {Brandon D.} and Keon Rabbani and Agostinho Antunes and Balacco, {Jennifer R.} and Chaisson, {Mark J.P.} and Haoyu Cheng and Joanna Collins and Melanie Couture and Alexandra Denisova and Olivier Fedrigo and Gallo, {Guido Roberto} and Giani, {Alice Maria} and Gooder, {Grenville Mac Donald} and Kathleen Horan and Nivesh Jain and Cassidy Johnson and Heebal Kim and Chul Lee and Tomas Marques-Bonet and Brian O{\textquoteright}Toole and Arang Rhie and Simona Secomandi and Marcella Sozzoni and Tatiana Tilley and Marcela Uliano-Silva and {van den Beek}, Marius and Williams, {Robert W.} and Waterhouse, {Robert M.} and Phillippy, {Adam M.} and Jarvis, {Erich D.} and Schatz, {Michael C.} and Anton Nekrutenko and Giulio Formenti",

year = "2024",

month = mar,

doi = "10.1038/s41587-023-02100-3",

language = "English (US)",

volume = "42",

pages = "367--370",

journal = "Nature Biotechnology",

issn = "1087-0156",

publisher = "Nature Research",

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Larivière, D, Abueg, L, Brajuka, N, Gallardo-Alba, C, Grüning, B, Ko, BJ, Ostrovsky, A, Palmada-Flores, M, Pickett, BD, Rabbani, K, Antunes, A, Balacco, JR, Chaisson, MJP, Cheng, H, Collins, J, Couture, M, Denisova, A, Fedrigo, O, Gallo, GR, Giani, AM, Gooder, GMD, Horan, K, Jain, N, Johnson, C, Kim, H, Lee, C, Marques-Bonet, T, O’Toole, B, Rhie, A, Secomandi, S, Sozzoni, M, Tilley, T, Uliano-Silva, M, van den Beek, M, Williams, RW, Waterhouse, RM, Phillippy, AM, Jarvis, ED, Schatz, MC, Nekrutenko, A & Formenti, G 2024, 'Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy', Nature Biotechnology, vol. 42, no. 3, pp. 367-370. https://doi.org/10.1038/s41587-023-02100-3

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T1 - Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

AU - Larivière, Delphine

AU - Abueg, Linelle

AU - Brajuka, Nadolina

AU - Gallardo-Alba, Cristóbal

AU - Grüning, Bjorn

AU - Ko, Byung June

AU - Ostrovsky, Alex

AU - Palmada-Flores, Marc

AU - Pickett, Brandon D.

AU - Rabbani, Keon

AU - Antunes, Agostinho

AU - Balacco, Jennifer R.

AU - Chaisson, Mark J.P.

AU - Cheng, Haoyu

AU - Collins, Joanna

AU - Couture, Melanie

AU - Denisova, Alexandra

AU - Fedrigo, Olivier

AU - Gallo, Guido Roberto

AU - Giani, Alice Maria

AU - Gooder, Grenville Mac Donald

AU - Horan, Kathleen

AU - Jain, Nivesh

AU - Johnson, Cassidy

AU - Kim, Heebal

AU - Lee, Chul

AU - Marques-Bonet, Tomas

AU - O’Toole, Brian

AU - Rhie, Arang

AU - Secomandi, Simona

AU - Sozzoni, Marcella

AU - Tilley, Tatiana

AU - Uliano-Silva, Marcela

AU - van den Beek, Marius

AU - Williams, Robert W.

AU - Waterhouse, Robert M.

AU - Phillippy, Adam M.

AU - Jarvis, Erich D.

AU - Schatz, Michael C.

AU - Nekrutenko, Anton

AU - Formenti, Giulio

PY - 2024/3

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JO - Nature Biotechnology

JF - Nature Biotechnology

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ER -

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

All Science Journal Classification (ASJC) codes

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