Selscan 2.0: Scanning for sweeps in unphased data

Zachary A. Szpiech

doi:10.1093/bioinformatics/btae006

Selscan 2.0: Scanning for sweeps in unphased data

Zachary A. Szpiech

Biology

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Abstract

Summary: Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.

Original language	English (US)
Article number	btae006
Journal	Bioinformatics
Volume	40
Issue number	1
DOIs	https://doi.org/10.1093/bioinformatics/btae006
State	Published - Jan 1 2024

All Science Journal Classification (ASJC) codes

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

Access to Document

10.1093/bioinformatics/btae006

Cite this

@article{126782e7aea64a08a467e3d51d5e1d2d,

title = "Selscan 2.0: Scanning for sweeps in unphased data",

abstract = "Summary: Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.",

author = "Szpiech, {Zachary A.}",

note = "Publisher Copyright: {\textcopyright} 2024 The Author(s). Published by Oxford University Press.",

year = "2024",

month = jan,

day = "1",

doi = "10.1093/bioinformatics/btae006",

language = "English (US)",

volume = "40",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "1",

}

TY - JOUR

T1 - Selscan 2.0

T2 - Scanning for sweeps in unphased data

AU - Szpiech, Zachary A.

PY - 2024/1/1

Y1 - 2024/1/1

N2 - Summary: Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.

AB - Summary: Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.

UR - http://www.scopus.com/inward/record.url?scp=85182501092&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=85182501092&partnerID=8YFLogxK

U2 - 10.1093/bioinformatics/btae006

DO - 10.1093/bioinformatics/btae006

M3 - Article

C2 - 38180866

AN - SCOPUS:85182501092

SN - 1367-4803

VL - 40

JO - Bioinformatics

JF - Bioinformatics

IS - 1

M1 - btae006

ER -

Selscan 2.0: Scanning for sweeps in unphased data

Abstract

All Science Journal Classification (ASJC) codes

Access to Document

Other files and links

Cite this