TY - JOUR
T1 - Structural dynamics of protein backbone ψ angles
T2 - Extended molecular dynamics simulations versus experimental 3J scalar couplings
AU - Markwick, Phineus R.L.
AU - Showalter, Scott A.
AU - Bouvignies, Guillaume
AU - Brüschweiler, Rafael
AU - Blackledge, Martin
N1 - Funding Information:
Acknowledgments G. B. received a grant from the CEA. This work was supported by EU through EU-NMR JRA3 and through ANR NT05-4_42781 and by the National Science Foundation (MCB-0918362). The authors would like to thank Dr. Frank Löhr for helpful discussions.
PY - 2009
Y1 - 2009
N2 - 3J scalar couplings report on the conformational averaging of backbone ψ angles in peptides and proteins, and therefore represent a potentially powerful tool for studying the details of both structure and dynamics in solution. We have compared an extensive experimental dataset with J-couplings predicted from unrestrained molecular dynamics simulation using enhanced sampling available from accelerated molecular dynamics or using long timescale trajectories (200 ns). The dynamic fluctuations predicted to be present along the backbone, in agreement with residual dipolar coupling analysis, are compatible with the experimental 3J scalar couplings providing a slightly better reproduction of these experimental parameters than a high-resolution static structure.
AB - 3J scalar couplings report on the conformational averaging of backbone ψ angles in peptides and proteins, and therefore represent a potentially powerful tool for studying the details of both structure and dynamics in solution. We have compared an extensive experimental dataset with J-couplings predicted from unrestrained molecular dynamics simulation using enhanced sampling available from accelerated molecular dynamics or using long timescale trajectories (200 ns). The dynamic fluctuations predicted to be present along the backbone, in agreement with residual dipolar coupling analysis, are compatible with the experimental 3J scalar couplings providing a slightly better reproduction of these experimental parameters than a high-resolution static structure.
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U2 - 10.1007/s10858-009-9341-z
DO - 10.1007/s10858-009-9341-z
M3 - Article
C2 - 19629714
AN - SCOPUS:69249206505
SN - 0925-2738
VL - 45
SP - 17
EP - 21
JO - Journal of Biomolecular NMR
JF - Journal of Biomolecular NMR
IS - 1-2
ER -