Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis

Keyphrases

• Amino Acids 100%
• Bacillus Subtilis (B. subtilis) 100%
• RNA Structure 100%
• RNA Switch 100%
• Amino Acid Starvation 100%
• Protein Binding 40%
• Transcription Attenuation 40%
• Transcript Abundance 40%
• Transcription Termination 40%
• Regulon 40%
• Riboswitch 40%
• Dimethyl Sulfate 40%
• Stringent Response 20%
• MRNA Stability 20%
• Adaptation 20%
• Attenuation Mechanism 20%
• Leader Peptide 20%
• Antiterminator 20%
• Acid-responsive 20%
• Lysine 20%
• Translation Initiation 20%
• Growing Media 20%
• Glycine 20%
• Transcriptome 20%
• Nutrient Stress 20%
• RNA-protein Complex 20%
• Structure Influence 20%
• Small Protein 20%
• Enhanced Protection 20%
• Starvation 20%
• RNA Structurome 20%
• Amino Acid Metabolism 20%
• CodY 20%
• T-box 20%

Biochemistry, Genetics and Molecular Biology

• Amino Acids 100%
• RNA 100%
• RNA Structure 100%
• Binding Protein 28%
• Transcription Termination 28%
• Regulon 28%
• Riboswitch 28%
• Dimethyl Sulfate 28%
• Metabolite 14%
• RNA Binding 14%
• Signal Peptide 14%
• Attenuation Mechanisms 14%
• Transcription 14%
• Translation Initiation 14%
• mRNA Stability 14%
• Amino Acid Metabolism 14%
• Transcriptome 14%
• Small RNAs 14%
• T-Box 14%

Immunology and Microbiology

• RNA Structure 100%
• Bacillus subtilis 100%
• Amino Acid 100%
• Protein Binding 28%
• Transcription Termination 28%
• Regulon 28%
• Riboswitch 28%
• Metabolite 14%
• RNA Binding 14%
• Transcriptome 14%
• Translation Initiation 14%
• Amino Acid Metabolism 14%
• Peptides 14%
• Lysine 14%
• mRNA Stability 14%
• Attenuation Mechanisms 14%