The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology

Joanna Friesner; Sarah M. Assmann; Ruth Bastow; Julia Bailey-Serres; Jim Beynon; Volker Brendel; C. Robin Buell; Alexander Bucksch; Wolfgang Busch; Taku Demura; Jose R. Dinneny; Colleen J. Doherty; Andrea L. Eveland; Pascal Falter-Braun; Malia A. Gehan; Michael Gonzales; Erich Grotewold; Rodrigo Gutierrez; Ute Kramer; Gabriel Krouk; Shisong Ma; R. J.Cody Markelz; Molly Megraw; Blake C. Meyers; James A.H. Murray; Nicholas J. Provart; Sue Rhee; Roger Smith; Edgar P. Spalding; Crispin Taylor; Tracy K. Teal; Keiko U. Torii; Chris Town; Matthew Vaughn; Richard Vierstra; Doreen Ware; Olivia Wilkins; Cranos Williams; Siobhan M. Brady

doi:10.1104/pp.17.01490

The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology

Joanna Friesner, Sarah M. Assmann, Ruth Bastow, Julia Bailey-Serres, Jim Beynon, Volker Brendel, C. Robin Buell, Alexander Bucksch, Wolfgang Busch, Taku Demura, Jose R. Dinneny, Colleen J. Doherty, Andrea L. Eveland, Pascal Falter-Braun, Malia A. Gehan, Michael Gonzales, Erich Grotewold, Rodrigo Gutierrez, Ute Kramer, Gabriel KroukShisong Ma, R. J.Cody Markelz, Molly Megraw, Blake C. Meyers, James A.H. Murray, Nicholas J. Provart, Sue Rhee, Roger Smith, Edgar P. Spalding, Crispin Taylor, Tracy K. Teal, Keiko U. Torii, Chris Town, Matthew Vaughn, Richard Vierstra, Doreen Ware, Olivia Wilkins, Cranos Williams, Siobhan M. Brady

Biology

Research output: Contribution to journal › Article › peer-review

11 Scopus citations

Original language	English (US)
Pages (from-to)	1499-1509
Number of pages	11
Journal	Plant physiology
Volume	175
Issue number	4
DOIs	https://doi.org/10.1104/pp.17.01490
State	Published - Dec 2017

All Science Journal Classification (ASJC) codes

Physiology
Genetics
Plant Science

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10.1104/pp.17.01490

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Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., Buell, C. R., Bucksch, A., Busch, W., Demura, T., Dinneny, J. R., Doherty, C. J., Eveland, A. L., Falter-Braun, P., Gehan, M. A., Gonzales, M., Grotewold, E., Gutierrez, R., Kramer, U., ... Brady, S. M. (2017). The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology. Plant physiology, 175(4), 1499-1509. https://doi.org/10.1104/pp.17.01490

@article{589daf22edca4411bb78a5dddcdfcf92,

title = "The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology",

author = "Joanna Friesner and Assmann, {Sarah M.} and Ruth Bastow and Julia Bailey-Serres and Jim Beynon and Volker Brendel and Buell, {C. Robin} and Alexander Bucksch and Wolfgang Busch and Taku Demura and Dinneny, {Jose R.} and Doherty, {Colleen J.} and Eveland, {Andrea L.} and Pascal Falter-Braun and Gehan, {Malia A.} and Michael Gonzales and Erich Grotewold and Rodrigo Gutierrez and Ute Kramer and Gabriel Krouk and Shisong Ma and Markelz, {R. J.Cody} and Molly Megraw and Meyers, {Blake C.} and Murray, {James A.H.} and Provart, {Nicholas J.} and Sue Rhee and Roger Smith and Spalding, {Edgar P.} and Crispin Taylor and Teal, {Tracy K.} and Torii, {Keiko U.} and Chris Town and Matthew Vaughn and Richard Vierstra and Doreen Ware and Olivia Wilkins and Cranos Williams and Brady, {Siobhan M.}",

note = "Funding Information: 1 This work was supported by the U.S. National Science Foundation (award nos. NSF-RCN 1518280 and NSF-RCN 1062348, funding the workshop that led to generation of this Commentary). 2Address correspondence to [email protected]. www.plantphysiol.org/cgi/doi/10.1104/pp.17.01490 3http://www.cyverse.org/ 4https://www.araport.org/ 5http://www.arabidopsis.org/ 6http://bar.utoronto.ca Funding Information: Food, Agriculture, Natural Resources, and Human Sciences Education and Literacy Initiative Fellowship program,23 and the National Institutes of Health K99 grant program.24 The Human Frontiers Science Program offers postdoctoral fellowships for citizens of many countries with a special category for cross-disciplinary fellowships to support training those in quantitative sciences in experimental biology.25 Moreover, the European Union{\textquoteright}s Marie Sk{\l}odowska-Curie Actions Individual Fellowships offer funds for additional training and for short 3-to 6-month visits. The Plant Biology section of the General Program and the Young Scientists Fund of the National Natural Science Foundation of China encourages interdisciplinary research that combine methods from plant biology and other areas, such as mathematics, physics, and computer sciences.26 Funding Information: While many academic institutions recognize the importance of these training efforts, they need funding to come into existence. The U.S. National Science Foundation (NSF) Research Traineeship Program20 Traineeship Track specifically fosters interdisciplinary training. The German Research Foundation provides funding for International Research Training Groups dedicated to a focused study abroad research program and a structured training strategy. In France, local funding agencies named Labex (for Laboratoire d{\textquoteright}Excellence) fund interdisciplinary interactions between local partners, an example being Numev,21 that promote interactions between computer and mathematical scientists and biologists with strong support for plant scientists. The Centre National de la Recherche Scientifique regularly promotes biology and math interactions through specific grant calls led by its Office for Interdisciplinary Research. In many of these cases, however, proposals are granted only for specific areas deemed to be a high priority to each funding organization, which may lower the success of proposals that do not fit easily into the chosen scope. Funding Information: This work was supported by the U.S. National Science Foundation (award nos. NSF-RCN 1518280 and NSF-RCN 1062348, funding the workshop that led to generation of this Commentary).",

year = "2017",

month = dec,

doi = "10.1104/pp.17.01490",

language = "English (US)",

volume = "175",

pages = "1499--1509",

journal = "Plant physiology",

issn = "0032-0889",

publisher = "American Society of Plant Biologists",

number = "4",

}

Friesner, J, Assmann, SM, Bastow, R, Bailey-Serres, J, Beynon, J, Brendel, V, Buell, CR, Bucksch, A, Busch, W, Demura, T, Dinneny, JR, Doherty, CJ, Eveland, AL, Falter-Braun, P, Gehan, MA, Gonzales, M, Grotewold, E, Gutierrez, R, Kramer, U, Krouk, G, Ma, S, Markelz, RJC, Megraw, M, Meyers, BC, Murray, JAH, Provart, NJ, Rhee, S, Smith, R, Spalding, EP, Taylor, C, Teal, TK, Torii, KU, Town, C, Vaughn, M, Vierstra, R, Ware, D, Wilkins, O, Williams, C & Brady, SM 2017, 'The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology', Plant physiology, vol. 175, no. 4, pp. 1499-1509. https://doi.org/10.1104/pp.17.01490

TY - JOUR

T1 - The next generation of training for arabidopsis researchers

T2 - Bioinformatics and quantitative biology

AU - Friesner, Joanna

AU - Assmann, Sarah M.

AU - Bastow, Ruth

AU - Bailey-Serres, Julia

AU - Beynon, Jim

AU - Brendel, Volker

AU - Buell, C. Robin

AU - Bucksch, Alexander

AU - Busch, Wolfgang

AU - Demura, Taku

AU - Dinneny, Jose R.

AU - Doherty, Colleen J.

AU - Eveland, Andrea L.

AU - Falter-Braun, Pascal

AU - Gehan, Malia A.

AU - Gonzales, Michael

AU - Grotewold, Erich

AU - Gutierrez, Rodrigo

AU - Kramer, Ute

AU - Krouk, Gabriel

AU - Ma, Shisong

AU - Markelz, R. J.Cody

AU - Megraw, Molly

AU - Meyers, Blake C.

AU - Murray, James A.H.

AU - Provart, Nicholas J.

AU - Rhee, Sue

AU - Smith, Roger

AU - Spalding, Edgar P.

AU - Taylor, Crispin

AU - Teal, Tracy K.

AU - Torii, Keiko U.

AU - Town, Chris

AU - Vaughn, Matthew

AU - Vierstra, Richard

AU - Ware, Doreen

AU - Wilkins, Olivia

AU - Williams, Cranos

AU - Brady, Siobhan M.

N1 - Funding Information: 1 This work was supported by the U.S. National Science Foundation (award nos. NSF-RCN 1518280 and NSF-RCN 1062348, funding the workshop that led to generation of this Commentary). 2Address correspondence to [email protected]. www.plantphysiol.org/cgi/doi/10.1104/pp.17.01490 3http://www.cyverse.org/ 4https://www.araport.org/ 5http://www.arabidopsis.org/ 6http://bar.utoronto.ca Funding Information: Food, Agriculture, Natural Resources, and Human Sciences Education and Literacy Initiative Fellowship program,23 and the National Institutes of Health K99 grant program.24 The Human Frontiers Science Program offers postdoctoral fellowships for citizens of many countries with a special category for cross-disciplinary fellowships to support training those in quantitative sciences in experimental biology.25 Moreover, the European Union’s Marie Skłodowska-Curie Actions Individual Fellowships offer funds for additional training and for short 3-to 6-month visits. The Plant Biology section of the General Program and the Young Scientists Fund of the National Natural Science Foundation of China encourages interdisciplinary research that combine methods from plant biology and other areas, such as mathematics, physics, and computer sciences.26 Funding Information: While many academic institutions recognize the importance of these training efforts, they need funding to come into existence. The U.S. National Science Foundation (NSF) Research Traineeship Program20 Traineeship Track specifically fosters interdisciplinary training. The German Research Foundation provides funding for International Research Training Groups dedicated to a focused study abroad research program and a structured training strategy. In France, local funding agencies named Labex (for Laboratoire d’Excellence) fund interdisciplinary interactions between local partners, an example being Numev,21 that promote interactions between computer and mathematical scientists and biologists with strong support for plant scientists. The Centre National de la Recherche Scientifique regularly promotes biology and math interactions through specific grant calls led by its Office for Interdisciplinary Research. In many of these cases, however, proposals are granted only for specific areas deemed to be a high priority to each funding organization, which may lower the success of proposals that do not fit easily into the chosen scope. Funding Information: This work was supported by the U.S. National Science Foundation (award nos. NSF-RCN 1518280 and NSF-RCN 1062348, funding the workshop that led to generation of this Commentary).

PY - 2017/12

Y1 - 2017/12

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UR - http://www.scopus.com/inward/citedby.url?scp=85037736520&partnerID=8YFLogxK

U2 - 10.1104/pp.17.01490

DO - 10.1104/pp.17.01490

M3 - Article

C2 - 29208732

AN - SCOPUS:85037736520

SN - 0032-0889

VL - 175

SP - 1499

EP - 1509

JO - Plant physiology

JF - Plant physiology

IS - 4

ER -

The next generation of training for arabidopsis researchers: Bioinformatics and quantitative biology

All Science Journal Classification (ASJC) codes

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